Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1161 ATGGACTGCATGGATGAGAGCACCACCACTGAATCGCTCTCCATCAGCCTTTCTCCGACCATATCGTCGGAGGACAAGCTGGTTCCGCCATCCAAGAACCTATCTCCTCCTCCGCCCTCCAACACCCTGTGCCGCGTCGGCAGCGGCGCCAGCGCAATCGTGGATCCTGATGGCGCCGGGAACACCGAGGCGGAGTCCAGGAAGCTTCCGTCGTCCAAGTACAAAGGCGTCGTGCCGCAACCCAACGGACGCTGGGGCGCCCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGAACCTTCAACGAGGAGGACGAGGCGGCCAGGGCGTACGACATCGCGGCGCAGCGCTTCCGCGGCAAGGACGCGGTCACCAACTTCAAGCCCGTCTCCGGCGGAGACGGCGACGACGACGACGGCGAGGCGGAGTTTCTCAACTCGCATTCCAAGTCGGAGATCGTCGACATGCTCAGGAAGCACACGTACAATGACGAGCTGGAGCAGAGCAAGCGCAGCCGCGGAGTCGTCCGGCGGCGCGGCGGAGCCGCCGGTGCCGGAACCGGGAACTCGATCTCCGGCGCGTGTTTTGTGAAGGCGCGTGAGCAGCTCTTCGAGAAGGCGGTCACGCCGAGCGACGTGGGGAAGTTGAACCGGTTGGTGATCCCGAAGCAGCACGCGGAGAAGCACTTTCCGCTGCAGAGCGTTAACGGCGTCAGCGCCACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTTGGGGGGAAAGTGTGGCGGTTCCGCTACTCGTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGTTGGAGCCGGTTCGTTAAAGAGAAGAATCTGAAAGCCGGTGACACGGTTTGCTTCCACCGGTCCACTGGACCGGACAAGCAGCTCTATATCGATTGGAAGGCGCGGAATAATAGCGTTAACGAGGTTGGGTTGTTCGGACCGGTCGGACCGGTGGTTGAACCGATTCAGATGGTTCGGCTCTTCGGCGTGAACATTTTGAAACTACCCGGTTCGGAGGCTAACAATAACAATAATGCAAGCGCAACCATTCCCGGGTTCTGCAATGGCAAAAGAAGAGAAATGGAGCTGTTTTCGTTAGAGTGTAGCAAGAAACCCAAGATTATTGGTGCTTTGTAA 1164 0.5885 MDCMDESTTTESLSISLSPTISSEDKLVPPSKNLSPPPPSNTLCRVGSGASAIVDPDGAGNTEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPVSGGDGDDDDGEAEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGVVRRRGGAAGAGTGNSISGACFVKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVNGVSATAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARNNSVNEVGLFGPVGPVVEPIQMVRLFGVNILKLPGSEANNNNNASATIPGFCNGKRREMELFSLECSKKPKIIGAL* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1161 387 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 387 IPR044800 GO:0003700
Pvu3g1161 387 Pfam B3 DNA binding domain 204 309 IPR003340 GO:0003677
Pvu3g1161 387 ProSiteProfiles B3 DNA-binding domain profile. 204 312 IPR003340 GO:0003677
Pvu3g1161 387 SMART B3_2 204 312 IPR003340 GO:0003677
Pvu3g1161 387 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700|GO:0006355
Pvu3g1161 387 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 20 387 - -
Pvu3g1161 387 SUPERFAMILY DNA-binding pseudobarrel domain 202 307 IPR015300 -
Pvu3g1161 387 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Pvu3g1161 387 SUPERFAMILY DNA-binding domain 72 128 IPR016177 GO:0003677
Pvu3g1161 387 CDD AP2 72 130 IPR001471 GO:0003700|GO:0006355
Pvu3g1161 387 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700|GO:0006355
Pvu3g1161 387 SMART rav1_2 73 134 IPR001471 GO:0003700|GO:0006355
Pvu3g1161 387 CDD B3_DNA 203 297 IPR003340 GO:0003677
Pvu3g1161 387 MobiDBLite consensus disorder prediction 1 76 - -
Pvu3g1161 387 MobiDBLite consensus disorder prediction 1 29 - -
Pvu3g1161 387 Gene3D - 194 319 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1161 Pvu-Chr3 28178527 28180564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1161 3 387 B3 DNA Binding Superfamily AT1G25560 58.883 1.21e-145 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Pvu3g1161 B3 3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1161 K09287 - gmx:100801107 608.986