Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1151 ATGAAGCTATTTGGTTTCTCCTTCAACTTGAAGCCTGCCATATCCTGTGAAGATGGTGCAAAGAGGTTCCATTGCCGATACTGCCGCCGCCAATTCTCAAATTCTCAAGCACTTGGAGGACACCAAAATGCTCACAGGAGGGAACGTGCTAAGTTAGCCCAGTTCAAATACCTTCTCCATCTTCGCCAACACCATGGCCATAGCTTCAAACCACCATCCAACAATGGAGCAAAAGGGTCTTCGCTTCATCATCCAAATGCCTCACCCAACGTTAGTGTTGGTAGTGCAACTACTGCCGCTTCGTTTCAATTTCACGGTGCAGCAGGGACACTGCTCCTGCAAGCACCACCGCGTGACGATCAAGTGGATCTCAACCTCAGACTCTAG 387 0.4935 MKLFGFSFNLKPAISCEDGAKRFHCRYCRRQFSNSQALGGHQNAHRRERAKLAQFKYLLHLRQHHGHSFKPPSNNGAKGSSLHHPNASPNVSVGSATTAASFQFHGAAGTLLLQAPPRDDQVDLNLRL* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1151 128 MobiDBLite consensus disorder prediction 65 94 - -
Pvu3g1151 128 MobiDBLite consensus disorder prediction 68 94 - -
Pvu3g1151 128 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Pvu3g1151 128 SUPERFAMILY beta-beta-alpha zinc fingers 19 50 IPR036236 -
Pvu3g1151 128 PANTHER ZINC FINGER PROTEIN 5 1 128 IPR044299 GO:0010090
Pvu3g1151 128 PANTHER ZINC FINGER PROTEIN 8-LIKE 1 128 - -
Pvu3g1151 128 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Pvu3g1151 128 Gene3D Classic Zinc Finger 19 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1151 Pvu-Chr3 27855253 27855639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1151 13 71 C2H2 Transcription Factor Family AT1G24625 47.458 4.00e-12 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu3g1151 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1151 - - vra:106766530 204.142