Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1148 ATGTCTCTCAGGCCAAATGCCAGAACCGAGGTTCGCCGCAACCGTTACAAGGTTGCAGTTGATGCTGACGAGGGTCGTCGCCGAAGAGAGGATAATATGGTCGAGATCCGAAAGAGCAAGCGCGAAGAGAGCTTGCAGAAGAAACGTCGCGAAGGTCTCCAAGCTCAGCAACAGTTTCCGGCTCCTCTTCAGGCTTCCACTGTTGACAAGAAGTTAGAGAGTCTTCCGGCGATGGTTGCTGGAGTTTGGTCGGATGATAATAATCTTCAACTTGAAGCCACTACGCAATTTCGCAAGCTGCTTTCAATTGAACGAAGCCCTCCGATTGAGGAAGTTATTCAAGCTGGTGTTGTTCCGCGTTTTGTTGAGTTTCTTGTCAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGTGGGCTCTTACAAACATTGCATCTGGAACTTCTGAGAACACTAAGGTGGTCATTGATCATGGGGCAGTTCCTATATTTGTCAAGCTGCTTAGTTCGCCCAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTCGAGATCTAGTGCTCAGCCATGGCGCCCTCGTCCCACTATTGGCTCAGTTGAATGAACATGCAAAACTTTCAATGTTAAGAAATGCCACATGGACATTATCTAACTTTTGTAGGGGTAAGCCACAGCCTCCATTTGAACAGGTGAGACCAGCACTTCCAGCACTTGAGCGCTTGATCTTCTCCAATGATGAAGAAGTTTTGACAGATGCTTGCTGGGCATTATCATATCTTTCTGACGGCCCGAATGACAAGATTCAAGCAGTTATTGAGGCACGTGTATGTCCCACATTGGTGCAGCTACTCTTGAACCAATCTCCCTCGGTGCTAATTCCTGCTCTTCGTACTGTGGGAAATATTGTAACTGGAGATGACATGCAAACTCAGTCTATTATCAATCATGGTGCGCTCCCTTGCCTTCTGAACCTGTTGAATCATAATCATAAAAAAAGCATCAAGAAAGAAGCTTGCTGGACTATATCAAATATTACTGCTGGAAATAAGGAACAGATACAGTCTGTTATTGAAGCTGGTCTGGTTGCCCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATCAAAAAGGAAGCTGCCTGGGCAGTCTCAAATGCTACATCTGGTGGAACTCATGACCAGATTAAGTACTTGGTTGCTCAGGGTTGCATAAAGCCTCTTTGTGATCTTCTTGTTTGTCCGGATCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATTCTGAAGGTTGGAGAAGCTGAGAAGAGCCTAGGTAACACTGGAGATGTCAACTTGTATGCACAGATGATAGACGATGCTGAGGGATTGGAGAAGATTGAAAACCTGCAGAGTCATGACAACAACGAAATCTACGAAAAGGCTGTTAAAATTCTTGAAACGTACTGGTTGGAAGATGAAGACGAGACCCTACCTTCAGGAGAGGGTGCTCAACCTGATTTTGCTTTTGGAAGTGAACTCCCAGTCCCGTCTGGTGGATTCAACTTCAGCTGA 1590 0.461 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFPAPLQASTVDKKLESLPAMVAGVWSDDNNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLIFSNDEEVLTDACWALSYLSDGPNDKIQAVIEARVCPTLVQLLLNQSPSVLIPALRTVGNIVTGDDMQTQSIINHGALPCLLNLLNHNHKKSIKKEACWTISNITAGNKEQIQSVIEAGLVAPLVNLLQNAEFDIKKEAAWAVSNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPSGEGAQPDFAFGSELPVPSGGFNFS* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1148 529 Gene3D - 73 496 IPR011989 -
Pvu3g1148 529 MobiDBLite consensus disorder prediction 501 529 - -
Pvu3g1148 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Pvu3g1148 529 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Pvu3g1148 529 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Pvu3g1148 529 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Pvu3g1148 529 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Pvu3g1148 529 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Pvu3g1148 529 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Pvu3g1148 529 Pfam Armadillo/beta-catenin-like repeat 317 357 IPR000225 GO:0005515
Pvu3g1148 529 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Pvu3g1148 529 SUPERFAMILY ARM repeat 6 501 IPR016024 -
Pvu3g1148 529 PANTHER IMPORTIN ALPHA 2 520 - -
Pvu3g1148 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Pvu3g1148 529 SMART arm_5 359 399 IPR000225 GO:0005515
Pvu3g1148 529 SMART arm_5 105 146 IPR000225 GO:0005515
Pvu3g1148 529 SMART arm_5 189 231 IPR000225 GO:0005515
Pvu3g1148 529 SMART arm_5 316 357 IPR000225 GO:0005515
Pvu3g1148 529 SMART arm_5 402 442 IPR000225 GO:0005515
Pvu3g1148 529 SMART arm_5 233 272 IPR000225 GO:0005515
Pvu3g1148 529 SMART arm_5 274 314 IPR000225 GO:0005515
Pvu3g1148 529 SMART arm_5 148 188 IPR000225 GO:0005515
Pvu3g1148 529 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Pvu3g1148 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Pvu3g1148 529 PIRSF Importin_alpha 2 528 IPR024931 GO:0005737|GO:0006606|GO:0061608
Pvu3g1148 529 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Pvu3g1148 529 PANTHER IMPORTIN SUBUNIT ALPHA 2 520 - -
Pvu3g1148 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Pvu3g1148 529 Pfam Atypical Arm repeat 457 505 IPR032413 -
Pvu3g1148 529 Gene3D - 11 50 IPR036975 GO:0006606
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1148 Pvu-Chr3 27787320 27791973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1148 131 391 U-box Gene Family AT3G46510 24.809 1.96e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1148 K15042 - gmx:100808498 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1148 3 27787320 27791973 Pvu9g2619 9 36613426 36618617 PCT