Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1147 ATGCTTCTTCCCTCGCTCTGGTGCCGCCAAATCGAGAGGTGTTCTCGGAATCCAATCGAATCTCAGATCTCGGAGATCGGAATGGTGGATCCAACTGAAAAAGGATCGGAGGGTGAGGACTCAAACCCTAACGCGCCTTCCTCGGGGAACAGTCCAAGCAGCAACAATGAGCAGAAGAAAACCTGCGCCGATTGCGGCACCACCAAGACCCCTCTCTGGAGGGGCGGTCCTGCAGGGCCTAAGTCTCTGTGCAACGCCTGCGGGATCAGAAGCCGGAAGAAGAAGAGAGCAATTCTGGGGATAAGCAAGGGGAGCAACGAGGACGGAAGAAAGGGGAAGAGGAGTGGCGGCGCCGGGGCCGCCGCAATAGGTGGCGGCGCGTTGGGGAGGGAGGTTTTGTTGCACCGATCGCATTGGAAGAAGCTCGGGGAGGAAGAAAAAGCTGCGGTGCTTTTGATGTCGCTCTCGTATGGATCCGTTTATGCTTGA 489 0.5706 MLLPSLWCRQIERCSRNPIESQISEIGMVDPTEKGSEGEDSNPNAPSSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGSNEDGRKGKRSGGAGAAAIGGGALGREVLLHRSHWKKLGEEEKAAVLLMSLSYGSVYA* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1147 162 MobiDBLite consensus disorder prediction 38 65 - -
Pvu3g1147 162 ProSiteProfiles GATA-type zinc finger domain profile. 56 92 IPR000679 GO:0006355|GO:0043565
Pvu3g1147 162 PANTHER OS01G0976800 PROTEIN 29 162 - -
Pvu3g1147 162 CDD ZnF_GATA 61 96 IPR000679 GO:0006355|GO:0043565
Pvu3g1147 162 Gene3D - 53 141 IPR013088 GO:0006355|GO:0008270
Pvu3g1147 162 MobiDBLite consensus disorder prediction 19 77 - -
Pvu3g1147 162 ProSitePatterns GATA-type zinc finger domain. 62 87 IPR000679 GO:0006355|GO:0043565
Pvu3g1147 162 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 56 96 - -
Pvu3g1147 162 MobiDBLite consensus disorder prediction 98 118 - -
Pvu3g1147 162 Pfam GATA zinc finger 62 96 IPR000679 GO:0006355|GO:0043565
Pvu3g1147 162 SMART GATA_3 56 110 IPR000679 GO:0006355|GO:0043565
Pvu3g1147 162 PANTHER OS01G0976800 PROTEIN 29 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1147 Pvu-Chr3 27781264 27782351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1147 53 162 C2C2-Gata Transcription Factor Family AT5G49300 55.085 5.27e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu3g1147 GATA 8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1147 - - pvu:PHAVU_003G110400g 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1147 3 27781264 27782351 Pvu3g1147 3 27781264 27782351 ECH