Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1120 ATGTGTGGGGGTGCTATCATTTCTGATTTCGTAGACGTGGAGGACGCATGTGAGAAGGTGAAGAAGAAAAGAGTGGTTACGCGAGTACGGAAGAACGCCTACAGAGGAATCAGGCAAAGGCCTTGGGGCAAGTGGGCTGCAGAAATAAGGGACCCACGCAAGGGTCTGCGCCTGTGGCTCGGCACATTCGCCACTGCCCAAGAAGCCGCTCGCGCCTACGACGACGCTATCATTTCTGATTTCGTAGACGTGGAGGACGCATGTGAGAAGGTGAAGAAGAAAAGAGTGGTTACGCGAGTACGGAAGAACGCCTACAGAGGAATCAGGCAAAGGCCTTGGGGCAAGTGGGCTGCAGAAATAAGGGACCCACGCAAGGGTCTGCGCCTGTGGCTCGGCACATTCGCCACTGCCCAAGAAGCCGCTCGCGCCTACGACGACGCTATCATTTCTGATTTCGTAGACGTGGAGGACGCATGTGAGAAGGTGAAGAAGAAAAGAGTGGTTACGCGAGTACGGAAGAACGCCTACAGAGGAATCAGGCAAAGGCCTTGGGGCAAGTGGGCTGCAGAAATAAGGGACCCACGCAAGGGTCTGCGCCTGTGGCTCGGCACATTCGCCACTGCCCAAGAAGCCGCTCGCGCCTACGACGACGCTATCATTTCTGATTTCGTAGACGTGGAGGACGCATGTGAGAAGGTGAAGAAGAAAAGAGTGGTTACGCGAGTACGGAAGAACGCCTACAGAGGAATCAGGCAAAGGCCTTGGGGCAAGTGGGCTGCAGAAATAAGGGACCCACGCAAGGGTCTGCGCCTGTGGCTCGGCACATTCGCCACTGCCCAAGAAGCCGCTCGCGCCTACGACGACGCCGCCCTGCGCATCCGCGGAGACAAGGCTAAGCTCAACTTCCCCCGCCACCACCACCCTCCCCCCGACAACAACCCATGCCTCAGCCCCGAGTTCACTCAGCCCTGTTATCAACCCACTTTTAATAACACCGACCCTCTACTCGCCAACCATATTTCCAACCTCGAATCGTTTCTTGGTTTGGAGCCTGAACAGCTTCCGATGCAGCCACTGCCACTTCCTGAGTGGGACCCGCTCCACGACGTCGTTTTTCCCAACCGCCACCTCTTCTGA 1137 0.5673 MCGGAIISDFVDVEDACEKVKKKRVVTRVRKNAYRGIRQRPWGKWAAEIRDPRKGLRLWLGTFATAQEAARAYDDAIISDFVDVEDACEKVKKKRVVTRVRKNAYRGIRQRPWGKWAAEIRDPRKGLRLWLGTFATAQEAARAYDDAIISDFVDVEDACEKVKKKRVVTRVRKNAYRGIRQRPWGKWAAEIRDPRKGLRLWLGTFATAQEAARAYDDAIISDFVDVEDACEKVKKKRVVTRVRKNAYRGIRQRPWGKWAAEIRDPRKGLRLWLGTFATAQEAARAYDDAALRIRGDKAKLNFPRHHHPPPDNNPCLSPEFTQPCYQPTFNNTDPLLANHISNLESFLGLEPEQLPMQPLPLPEWDPLHDVVFPNRHLF* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1120 378 ProSiteProfiles AP2/ERF domain profile. 33 78 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 PANTHER DNA-BINDING DOMAIN 92 145 IPR044808 GO:0003700|GO:0009873
Pvu3g1120 378 PANTHER DNA-BINDING DOMAIN 163 216 IPR044808 GO:0003700|GO:0009873
Pvu3g1120 378 PANTHER DNA-BINDING DOMAIN 21 74 IPR044808 GO:0003700|GO:0009873
Pvu3g1120 378 PANTHER DNA-BINDING DOMAIN 234 316 IPR044808 GO:0003700|GO:0009873
Pvu3g1120 378 SUPERFAMILY DNA-binding domain 104 149 IPR016177 GO:0003677
Pvu3g1120 378 Pfam AP2 domain 176 218 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 Pfam AP2 domain 34 76 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 Pfam AP2 domain 105 147 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 Pfam AP2 domain 247 295 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 SUPERFAMILY DNA-binding domain 246 304 IPR016177 GO:0003677
Pvu3g1120 378 SUPERFAMILY DNA-binding domain 33 78 IPR016177 GO:0003677
Pvu3g1120 378 SMART rav1_2 175 228 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 SMART rav1_2 246 309 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 SMART rav1_2 33 86 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 SMART rav1_2 104 157 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 CDD AP2 34 78 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 ProSiteProfiles AP2/ERF domain profile. 246 303 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 CDD AP2 105 149 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 SUPERFAMILY DNA-binding domain 175 220 IPR016177 GO:0003677
Pvu3g1120 378 Gene3D AP2/ERF domain 104 153 IPR036955 GO:0003700|GO:0006355
Pvu3g1120 378 Gene3D AP2/ERF domain 246 304 IPR036955 GO:0003700|GO:0006355
Pvu3g1120 378 Gene3D AP2/ERF domain 33 82 IPR036955 GO:0003700|GO:0006355
Pvu3g1120 378 Gene3D AP2/ERF domain 175 224 IPR036955 GO:0003700|GO:0006355
Pvu3g1120 378 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 ProSiteProfiles AP2/ERF domain profile. 175 220 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 CDD AP2 176 220 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 CDD AP2 247 303 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 ProSiteProfiles AP2/ERF domain profile. 104 149 IPR001471 GO:0003700|GO:0006355
Pvu3g1120 378 PANTHER EREBP TRANSCRIPTION FACTOR 21 74 - -
Pvu3g1120 378 PANTHER EREBP TRANSCRIPTION FACTOR 234 316 - -
Pvu3g1120 378 PANTHER EREBP TRANSCRIPTION FACTOR 92 145 - -
Pvu3g1120 378 PANTHER EREBP TRANSCRIPTION FACTOR 163 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1120 Pvu-Chr3 26813958 26815094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1120 231 371 AP2-EREBP Transcription Factor Family AT3G16770 43.850 1.05e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pvu3g1120 AP2 5.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1120 K09286 - gmx:100779626 122.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1120 3 26813958 26815094 Pvu3g1120 3 26813958 26815094 ECH
Pvu3g1120 3 26813958 26815094 Pvu9g2600 9 36449776 36451645 PCT