Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1115 ATGGATAACCATAATTTTTCTTCAGGCATTGATGCGTTTAAGCAGCAGAAGAAAAAGGGTGGGCGGAAGAAGATTGAGATAAAGAAGATCGAGAAGTCTAGCAACAAGCAAGTGACATTCTCAAAAAGAAGAACAGGGCTATTCAAAAAAGCGAGTGAACTGTGCCTTTTGTGCAATGCCAGTATGGCCATTATTGTGTTTTCTCCTGCTGAAAAATTGTTCTGCTTCGGTCACCCAGATTTGGAGGGCATTGTTGAAAGCTACCTGAGAGGTGACAAAGTGTTTCAACCACTGGAGTCAAGGGAGAGATCAGTGTCGTATGAAGAGTGCAACAAGCAATACGAGGAGGCAACAAAGAAGTTGGAGTTGGAAAAGAAGAATCTGAGAGAAACTGACACTCTGGTTAATGGGTTTAACAGAAGGTGGTGGGAGGACCCTATTGATCAGATGAGTGAAACTGAGTTGGAACAGTTTATGGTGTCTGTTTATGAGTTGAGGAGAAAATTAGCCGAAAGGGGTGGTGAATTGCTGAAGCAAGCAATGCTGTAG 549 0.4281 MDNHNFSSGIDAFKQQKKKGGRKKIEIKKIEKSSNKQVTFSKRRTGLFKKASELCLLCNASMAIIVFSPAEKLFCFGHPDLEGIVESYLRGDKVFQPLESRERSVSYEECNKQYEEATKKLELEKKNLRETDTLVNGFNRRWWEDPIDQMSETELEQFMVSVYELRRKLAERGGELLKQAML* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1115 182 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 17 179 - -
Pvu3g1115 182 Coils Coil 107 134 - -
Pvu3g1115 182 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Pvu3g1115 182 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Pvu3g1115 182 SUPERFAMILY SRF-like 21 91 IPR036879 GO:0003677|GO:0046983
Pvu3g1115 182 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Pvu3g1115 182 Gene3D - 33 104 IPR036879 GO:0003677|GO:0046983
Pvu3g1115 182 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Pvu3g1115 182 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Pvu3g1115 182 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Pvu3g1115 182 PANTHER MADS BOX PROTEIN 17 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1115 Pvu-Chr3 26796332 26796880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1115 17 167 Type I MADS-box Gene Family AT5G60440 40.000 3.73e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu3g1115 SRF-TF 1.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1115 - - vra:106766532 281.567