Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1114 ATGGCAGGTGGTGGATTCGACAGCGTTCATGAGAAGAAGAAGAGGCTCGCAATTCTCACCGTCTCCTCCGTCCTCCTTGTGGCGATGGTTGCCGCGGTAGCCGTTGGCATAAGAGACAACGAAGAGATGGCCGAGGAAGGAGGCGACAGCGGCATCGTGAAAAATCAGAGGAACGTGAAAGTGATATGTCAATCCGCCGAATACAAAGAAACCTGCCAGAAGAGTCTTGAAAAGGCTTCCGATGAAAACAGTGACCTGAAGCAGCTTATCATTACCGCCTTCAACGCCACCGCCGAGGAGATTCACAGCAAAATTAAAAACTCAACGCTCTTCCAGGAGTTGGCCACCGACAACATGACCAAACAGGCCATGGAAATTTGTCAGGAAGTTCTCGGTTACGCTGTGGATGATATAAACAAATCCTCCGCCACCTTGGAGAAGTTTGACCTAAGCATGTTGAACGAGTACGCCTATGACCTCAAGGTTTGGATCGCGGGTACCCTTGCCCACCAGCAAACATGCTTGGACGGGTTCAATCACACCACTACCGAGGCTGGGAAGACTATGACTAGGGTTCTCAACGCGTCACTGGAGATGAGCCACAACGCGTTGGACATAGTGAACGGTGCGTCAGCTCTCTTCAAGGGTCTTAACTTCACCTCCTTCGCCGCCAGCAACAGGAAGCTTCTCTCGGAAGAGCCTTTGGTTGATGGGTTGGTTGATGGGTTCCCTTCGTGGGTGACTGAAGGGCAGAGGAAGATTCTGGAAGATGCTAATCCCAAACCCGACGTGGTGGTGGCTCTGGATGGGAGTGGACAGGTGACGAAAATCCACGAAGCTCTCAAACTGGTGCCTAAGAATAACAAGAAGCCTTTTGTTATTTACATCAAGGCCGGTATCTATCAGGAGTATGTTAGAATGAACAAGCACATGTCCTTTGTCACCATGATCGGTGATGGCCCCACTCGCACCAGAATCACCGGCAACAAAAACTACGTCGATGGCGAACAGACCTACAACACCGCAACCTTCGGTGCGAACGCTGCAAACTTCATGGCGAAGAACATTGGGTTCGAGAACTCGGCAGGAGCAGAGAAGCACCAAGCAGTGGCTCTGAGGGTAACAGCTGACAAGGCAGTGTTCTACAACTGTCACATGGACGGCTACCAAGACACCCTCTATACCCAGTCCCAGCGCCAGTTCTACCGCGACTGCACCGTCAGCGGCACCATCGACTTTGTCTTCGGCGACGCCGTCGCCGTTTTCCAGAACTGCAAGTTCGTTGTGAGGAAGCCCATGGAGAACCAGCAGTGCATGGTCACCGCCGGCGGAAGGAGCAAGATCGACAGCCCCAGCGCCCTGGTGTTCCAGAGCTGTACCTTCACCGGCGAGCCGGACCTCGTGGCCGTGACCCCGAAGATCTCATACCTCGGGAGGCCCTGGAGGATTTACTCGAAGGTGGTGATAATTGACTCCCAAATCGATGACATCTTCGTCCCCGAAGGGTACATGCCCTGGATGGGAAGCGCCTTCAGAGATACCTGCACCTACTACGAGTTCAACAACAGGGGTCCTGGTGCTAACACCGCTGGAAGAGTCACATGGCCAGGTTTTAAGGTGATTAACCCTACTGAGGCTGCTGAGTACTACCCTGGAAAGTTCTTTGAGATTGCCAACTCCACTGATCGTGACGCTTGGATCCTTGAATCTGGGGTGCCCTATTCCCTTGGCTCACTTCCATCATCCACCGCTATGCCTGCAGTTTAA 1767 0.5291 MAGGGFDSVHEKKKRLAILTVSSVLLVAMVAAVAVGIRDNEEMAEEGGDSGIVKNQRNVKVICQSAEYKETCQKSLEKASDENSDLKQLIITAFNATAEEIHSKIKNSTLFQELATDNMTKQAMEICQEVLGYAVDDINKSSATLEKFDLSMLNEYAYDLKVWIAGTLAHQQTCLDGFNHTTTEAGKTMTRVLNASLEMSHNALDIVNGASALFKGLNFTSFAASNRKLLSEEPLVDGLVDGFPSWVTEGQRKILEDANPKPDVVVALDGSGQVTKIHEALKLVPKNNKKPFVIYIKAGIYQEYVRMNKHMSFVTMIGDGPTRTRITGNKNYVDGEQTYNTATFGANAANFMAKNIGFENSAGAEKHQAVALRVTADKAVFYNCHMDGYQDTLYTQSQRQFYRDCTVSGTIDFVFGDAVAVFQNCKFVVRKPMENQQCMVTAGGRSKIDSPSALVFQSCTFTGEPDLVAVTPKISYLGRPWRIYSKVVIIDSQIDDIFVPEGYMPWMGSAFRDTCTYYEFNNRGPGANTAGRVTWPGFKVINPTEAAEYYPGKFFEIANSTDRDAWILESGVPYSLGSLPSSTAMPAV* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1114 588 Coils Coil 69 89 - -
Pvu3g1114 588 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 208 IPR035513 -
Pvu3g1114 588 PANTHER PECTINESTERASE 9 581 - -
Pvu3g1114 588 SMART PMEI_2 54 206 IPR006501 GO:0004857
Pvu3g1114 588 CDD PMEI-like_3 62 212 - -
Pvu3g1114 588 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 210 IPR035513 -
Pvu3g1114 588 ProSitePatterns Pectinesterase signature 1. 288 307 IPR018040 -
Pvu3g1114 588 PANTHER PECTINESTERASE 9 581 - -
Pvu3g1114 588 Gene3D - 261 579 IPR012334 -
Pvu3g1114 588 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Pvu3g1114 588 Pfam Plant invertase/pectin methylesterase inhibitor 59 206 IPR006501 GO:0004857
Pvu3g1114 588 SUPERFAMILY Pectin lyase-like 260 574 IPR011050 -
Pvu3g1114 588 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 208 IPR006501 GO:0004857
Pvu3g1114 588 Pfam Pectinesterase 263 555 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1114 Pvu-Chr3 26758983 26761215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1114 5 588 Carbohydrate Esterase AT3G05610 43.939 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1114 K01051 - gmx:100820068 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1114 3 26758983 26761215 Pvu9g2590 9 36362000 36364996 PCT