Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1093 ATGCAGAACGAGGAAGGAAAACTCACTGAGTTATACGTTCCTAGGAAATGCTCTGCCACTAACAGACTCATAACTGCAAAGGACCATGCCTCAGTTCAGATGAACATTGGCCATTTGGATGAGAATGGTATCCACAATGGTCATTTTTCCACGTTTGCTCTCTGTGGCTTCCTTCGAGCACAGGGTGATGCTGACAGTGCACTAGATAGGTTGTGGCTGAAGAAGAAAGCAGAAATTAAACAACACTAG 249 0.4458 MQNEEGKLTELYVPRKCSATNRLITAKDHASVQMNIGHLDENGIHNGHFSTFALCGFLRAQGDADSALDRLWLKKKAEIKQH* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1093 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Pvu3g1093 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Pvu3g1093 82 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Pvu3g1093 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 - -
Pvu3g1093 82 Gene3D - 1 81 IPR038579 -
Pvu3g1093 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1093 Pvu-Chr3 26078447 26079699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1093 1 82 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 78.049 1.84e-48 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1093 K02971 - gmx:100499937 155.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1093 3 26078447 26079699 Pvu9g2562 9 36099229 36100715 PCT