Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1079 ATGAACTCCATTCTGCGCCACCGCCTTAGGCTAAGTCCGACACCTATTCTCTATTCTTTCCCCAAATCCCTTTTTCCCCAAACCTCTCTTCTTTTCTCAACAACCACTTCTGATCCTCGCACCTTCACCTTATCCTATCTCATCAACACCTGCGGCTTCTCGCACGAGGTCGCACTTAAACTATCCAAACGACTTCGTTTCGAAACCGCTCAAAAACCCGATTCCATCATCTCTTTCTTCCAAACCCACGGTTTCTCCGTCTCCCAGATCTACCGCATCTTCTCCCAAGCCCCCGATCTCATGCTATGCGATCCCACCAAAAGGCTTCTCCCCAAATTCCAATTCTTAGCCTCTAAAGGCGCTACGCCCTCCGACACCATTCTCACCATCTCCAAGAGCCCCCGTTTCCTCCGTTACAGTCTCAACAACCACATCATTCCCATCTTCGAACTGATCCGAACGTTCTTGCCCTCCGACCTCAGAGCCCTCGCTGTTCTCATCGCCTGTCCCAATTTCATTGGAGACTCTCGCGTTGCCTCCAACGTTCAGATGTTGCTCGACGCCGGACTCACGCACTCCGCCATTCGCTACTTGCTCTGCTCTCGGCCTTCGGTTCTCTGCTCCGACCTGAGAAACGTTGTGGAGGAAGTGAAGCTATTGGGGTTTGACCCTTTGAAGCTGAGCTTCGCTTTGGCGCTTCTGGCTAAAAGGGCTATTTCCAAACCCCTTTGGGATGCCAAAGTCGAGGCCTTGAAGAAATGGGGTTGGTCCGAGGATGAAATTTTTGTTGCATTTAGGAACCAGCCTAACATGATGCTGCGCTCCAGGGAGAAACTTAATGCAGTGTTGGAGTTTTGGGTTGATCGGCTTGGTTGGGATCATTCCGCGCTTATTGCGTCCCCAACGTTGTTTTCATACAGTTTGGAGAAAAGGGTTGTTCCGAGGGCTTTGGTTGTGCAGTATCTTCTTTCCAAAGGGTTGGTGAAGAAGGGTGCTAGCTTGGTCACACCGTTTGGTATGTCTGACGAAATGTTTCTGCGAAAGTATGTGAAACGCTACAAGGAGGAAACGCCAAGGTTACTAGAGCTATATCAGGAGGGACAGGGAACGTGCTAG 1116 0.5045 MNSILRHRLRLSPTPILYSFPKSLFPQTSLLFSTTTSDPRTFTLSYLINTCGFSHEVALKLSKRLRFETAQKPDSIISFFQTHGFSVSQIYRIFSQAPDLMLCDPTKRLLPKFQFLASKGATPSDTILTISKSPRFLRYSLNNHIIPIFELIRTFLPSDLRALAVLIACPNFIGDSRVASNVQMLLDAGLTHSAIRYLLCSRPSVLCSDLRNVVEEVKLLGFDPLKLSFALALLAKRAISKPLWDAKVEALKKWGWSEDEIFVAFRNQPNMMLRSREKLNAVLEFWVDRLGWDHSALIASPTLFSYSLEKRVVPRALVVQYLLSKGLVKKGASLVTPFGMSDEMFLRKYVKRYKEETPRLLELYQEGQGTC* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1079 371 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Pvu3g1079 371 SMART mt_12 163 191 IPR003690 GO:0003690|GO:0006355
Pvu3g1079 371 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Pvu3g1079 371 SMART mt_12 196 223 IPR003690 GO:0003690|GO:0006355
Pvu3g1079 371 SMART mt_12 127 158 IPR003690 GO:0003690|GO:0006355
Pvu3g1079 371 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Pvu3g1079 371 Gene3D Transcription termination factor 3, mitochondrial 161 360 IPR038538 -
Pvu3g1079 371 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 19 366 - -
Pvu3g1079 371 Pfam mTERF 77 214 IPR003690 GO:0003690|GO:0006355
Pvu3g1079 371 Pfam mTERF 246 346 IPR003690 GO:0003690|GO:0006355
Pvu3g1079 371 PANTHER CGI-12 PROTEIN-RELATED 19 366 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1079 Pvu-Chr3 25586045 25588297 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pvu3g1079 mTERF 2.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1079 K15032 - gmx:102667698 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1079 3 25586045 25588297 Pvu3g1079 3 25586045 25588297 ECH
Pvu3g1079 3 25586045 25588297 Pvu9g2550 9 36022696 36023856 PCT