Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1078 ATGTTCATTGTTTACACCCACACAACTCTTGGTTGTGCCAAGGTTTTCGCTTTCACAACCCTAAAATGGAGTCCTCTTCTCCAACTCCAATTTCCCAATTTCCAATTCTGCACTGCCACCTCCACCTCCACCTCCCACTCACGCTCCTTTGTGGTTTCATACCTCATTAACAACTGTGCCTTCTCCCAAGAAACCGCTCTCAAAGCTTCCCGCAAGCTTCATTTTTCGAAACCCCAAAAGCCTGATTCTGTTCTCTCCTTCTTCCGAAACCACGCCTTCTCAAACTCTCATATATCTCATATCCTCCAAAGACAGCCCGGGCTACTTTCATGCAACACCCAAAAGACGCTGTTGCCAAAGTTTGAATTTTTGCGTTCAAAAGGTGCTTCCTCCCTTGACGTTATCCACGTCGTGACCGCCTGCCCTAATTTTCTCCGACGAAGCTTGAAGAGTCATATAATCCCAACATACGAATTTGTAAGAGGTTTCCTCCAAACCTTGTTTACAGAGAAGCAAATCATTGATTTCCTCATTCAGAATCCTTTTTTACTTTATGACGGGCGTGTGGCACCTAACGTCAAATTGTTGCTTGATAGTGGAGTTACCCACTCAGAAATGGTTAAATTGCTCCAGAGATGGCCTCGTGTACTCTACTCTGGCAACTTATCAAAGGCAGTTCAGGAATTGAAGCAAGTGGGCTTCGATGCTTCACTTTCAACTTTCTCCGTAGCATTGCTTGCCAAAAGGACCGTAAACGAAAGCAAATGGGACGAGAAGATTGACACTTATAAGAGGTGGGGGTGGTCCCAAGAACAAGTTCTTCTAGCATTTAGGAGGCATCCTTTTTGTATGTTGGCATCCCGTGATAAAATTAATGCAGTGATGAGTTTTTGGGTGGAGCAGGCAGGTTTCAATTCTGTGGACCTTGTCAAAACTCCTGGAATTATTTCACTGAGTCTCCGGAAAAGGATTGCTCCGAGGGCTTGTGTCTTGCAGTTCCTTATCTCAAAAGGTCTGGTACGGAACGGTGCAAGCTTAACTGTACCATTTGTTCTGACTGAGAAGTTGTTCCTGGACAAATATGTGAAACGTTTTAAGGAGGATTCTTCTCATCTTTTAAAGCTGTACACAGAAAATACGATTCTTGGAAATGATAATGACAACACTTGTAGGTGA 1176 0.4388 MFIVYTHTTLGCAKVFAFTTLKWSPLLQLQFPNFQFCTATSTSTSHSRSFVVSYLINNCAFSQETALKASRKLHFSKPQKPDSVLSFFRNHAFSNSHISHILQRQPGLLSCNTQKTLLPKFEFLRSKGASSLDVIHVVTACPNFLRRSLKSHIIPTYEFVRGFLQTLFTEKQIIDFLIQNPFLLYDGRVAPNVKLLLDSGVTHSEMVKLLQRWPRVLYSGNLSKAVQELKQVGFDASLSTFSVALLAKRTVNESKWDEKIDTYKRWGWSQEQVLLAFRRHPFCMLASRDKINAVMSFWVEQAGFNSVDLVKTPGIISLSLRKRIAPRACVLQFLISKGLVRNGASLTVPFVLTEKLFLDKYVKRFKEDSSHLLKLYTENTILGNDNDNTCR* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1078 391 Gene3D Transcription termination factor 3, mitochondrial 56 164 IPR038538 -
Pvu3g1078 391 Gene3D Transcription termination factor 3, mitochondrial 165 374 IPR038538 -
Pvu3g1078 391 PANTHER CGI-12 PROTEIN-RELATED 31 383 IPR003690 GO:0003690|GO:0006355
Pvu3g1078 391 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Pvu3g1078 391 SMART mt_12 174 202 IPR003690 GO:0003690|GO:0006355
Pvu3g1078 391 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Pvu3g1078 391 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Pvu3g1078 391 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Pvu3g1078 391 SMART mt_12 207 235 IPR003690 GO:0003690|GO:0006355
Pvu3g1078 391 Pfam mTERF 171 355 IPR003690 GO:0003690|GO:0006355
Pvu3g1078 391 Pfam mTERF 85 236 IPR003690 GO:0003690|GO:0006355
Pvu3g1078 391 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 31 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1078 Pvu-Chr3 25564970 25566145 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pvu3g1078 mTERF 2.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1078 K15032 - gmx:102667698 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1078 3 25564970 25566145 Pvu3g1078 3 25564970 25566145 ECH
Pvu3g1078 3 25564970 25566145 Pvu9g2549 9 36016711 36018422 PCT