Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1076 ATGCTGTCTTGGTCAATAAAGAGAGTAGTTCAACTGTTGGAGTTGAATTCATTCCTTCCCAAGATGGTGGACAATGTTGGAGGCAGTTCCTCTAATCCTGAAAACAGTGGCATCAGGGAACAAGACTGTTTGTTGCCAATAGCCAATGTTGGGAGGATCATGAAGCAGATTCTGCCTCCTAACGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGTATCAGAGTTTATAAGCTTTGTGACGAGTGAGGCATCAGAGAAGTGCAGGAAGGAGAGGAGGAAGACTGTGAACGGAGATGATATATGCTGGGCCTTAGGGTCGCTTGGTTTTGATGACTATGCAGAGCCATTGAGAAGGTATTTGCACAGATATAGAGAAGTAGAAGTAGATAGATCAGCCATCCAAGAGAGAGGAAATAGCCCCTCAAAAGATAAGGATAATGAATTCTGA 459 0.4292 MLSWSIKRVVQLLELNSFLPKMVDNVGGSSSNPENSGIREQDCLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRRYLHRYREVEVDRSAIQERGNSPSKDKDNEF* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1076 152 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 108 IPR003958 -
Pvu3g1076 152 SUPERFAMILY Histone-fold 41 150 IPR009072 GO:0046982
Pvu3g1076 152 Gene3D Histone, subunit A 32 151 IPR009072 GO:0046982
Pvu3g1076 152 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Pvu3g1076 152 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Pvu3g1076 152 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Pvu3g1076 152 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 22 147 - -
Pvu3g1076 152 ProSitePatterns NF-YB/HAP3 subunit signature. 75 91 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pvu3g1076 152 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 22 147 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1076 Pvu-Chr3 25477244 25478133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1076 38 150 CCAAT-HAP3 Transcription Factor Family AT2G47810 69.027 7.02e-55 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu3g1076 CBFD_NFYB_HMF 7.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1076 K08065 - gmx:100786046 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1076 3 25477244 25478133 Pvu9g2548 9 36004916 36006567 PCT