Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1068 ATGAAGAAGATCTCAACCCTAAGAATCCTTCACCATCATCATTCTCTTCTGAATCGCAGTCCACCCTTCTCCCTCTGTTTCAATTTCAAATTCGCCACCATCCCTCACGCCCACTCCTTTGTTGTCTCCTACCTCGTCTCAACCTGCGGCTTCTCACCGGAATCCGCCGTCTCCGCCTCCCGCCACCTCCGCTTCCACAGTCCACAGAAGCCTGACTCCGTCCTGGCATTCTTCTCTGCGCATGGCTTCTCAGTCTCCCAAATCCGCTCCATCGTCAAAAGGGAAAGCCGCATCCTCCTCTGCAATCCCGACAAGGTCCTCCTCCCCAAGTTCCTCTTCCTCCGCTCCAAAGGCGCCTCCCCCGCCGACATAGTCCACATGGTCACCACCGGCCCTCGCGTCCTCCTTCGCAGCCTCGATAACCACATCGTCCCCACCTATCTCTTCATCAAAAGTTTTGTGGAATCCGACAAGCAAATCATCACCTGTCTCAAGCGCAACCTCTCCTTCATTGGCGACCGTCGCCTATCTTCCAACGTCCAAATTCTCCTGGATAACGGCGTTAAACGTTCCAGTATCGCCATGTTGCTCACCATGTGGCCCTCTATCCTCTGCACCTATAACCTGTCCCACACTGTTTCTGAATTGAAGGAAATGGGGTTTGAAACTTCCACCTCCACTTTCGCCGTCGCCATGCTCGCCAAAAGGACTGTGACTAAAGCCAAGTGGGACGACAAAGTTGAGGCTTTTAAGAAGTGGGGGTGGTCGGAGGAGCATGTGCTTGTGGCGTTTAAGAAGCACCCTTATTGCATGTTGACGGCCCGTGAGAAGATTGAAGCCGTGTTCAGCTTTTGGGTTGAGGTGTTAGGGTATAGCTCTTTGGAGCTTCTCAAGTATCCTGTTATTTTTCCGATGAGTCTCTCTAAGAGGATTGTTCCCAGGTCTTTGGTTCTGAGGTTTCTTGCCAAGGAAGGTTTGCGGAAAAAGGGTGCCAGCAATTGCACGCCTATACTCGTGACGGAGAATGTGTTTCTGAACAAGTTTGTCAATTGTTTTGAGAAGCATTCTTCTCAGTTGTTGACGATGTATGAGAAAAGTCAGAATGAAGGGAACACTGGTAAGGGGGAGAAGAATGTTTGCTTGTAG 1146 0.5087 MKKISTLRILHHHHSLLNRSPPFSLCFNFKFATIPHAHSFVVSYLVSTCGFSPESAVSASRHLRFHSPQKPDSVLAFFSAHGFSVSQIRSIVKRESRILLCNPDKVLLPKFLFLRSKGASPADIVHMVTTGPRVLLRSLDNHIVPTYLFIKSFVESDKQIITCLKRNLSFIGDRRLSSNVQILLDNGVKRSSIAMLLTMWPSILCTYNLSHTVSELKEMGFETSTSTFAVAMLAKRTVTKAKWDDKVEAFKKWGWSEEHVLVAFKKHPYCMLTAREKIEAVFSFWVEVLGYSSLELLKYPVIFPMSLSKRIVPRSLVLRFLAKEGLRKKGASNCTPILVTENVFLNKFVNCFEKHSSQLLTMYEKSQNEGNTGKGEKNVCL* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1068 381 Pfam mTERF 175 329 IPR003690 GO:0003690|GO:0006355
Pvu3g1068 381 Pfam mTERF 75 223 IPR003690 GO:0003690|GO:0006355
Pvu3g1068 381 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 18 365 - -
Pvu3g1068 381 PANTHER CGI-12 PROTEIN-RELATED 18 365 IPR003690 GO:0003690|GO:0006355
Pvu3g1068 381 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Pvu3g1068 381 SMART mt_12 194 222 IPR003690 GO:0003690|GO:0006355
Pvu3g1068 381 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Pvu3g1068 381 SMART mt_12 293 327 IPR003690 GO:0003690|GO:0006355
Pvu3g1068 381 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Pvu3g1068 381 Gene3D Transcription termination factor 3, mitochondrial 139 358 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1068 Pvu-Chr3 25253942 25255955 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pvu3g1068 mTERF 5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1068 K15032 - gmx:100788877 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1068 3 25253942 25255955 Pvu3g1068 3 25253942 25255955 ECH