Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1066 ATGTCAACCTCTAGAACCTCAGATACACCCTTCAAAGGATATGATCCCACCCAAACTCAAATGTGTCTCTCTCTTCTCCAACGCAACACATCTCCTTGTGGTGAGAGAAGAGGCAGAAGGAAGCAAGCAGAGCCAGGAAGGTTCCTCGGGGTAAGGAGGCGCCCCTGGGGTCGATATGCTGCTGAGATCAGAGACCCCACAACCAAAGAAAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAGGCAAGAACCAACTTTGTTTACTCTGACAACATCAACTTCCACACTATCCTTTCTCCTGCGGATGTTCAAGTTCAAGTTCAAGTTCAACCTCTCTTGCCACCTTCACAGTTCCTCACTAACACCACTCACACCAAACAACCAAACCACCAAAATACCCTCCCCAAGGTTATTCACACTTCAAACGGTGGAAATCCCTCCCCATTGAACAATATTGACGTGTGTGTTGAAACCACATATGGGTCGGCTCAGGATGATAGTTACTTCTTTTCCAGTGATTCTAACTCTGGCTATCTGGAATGCATAGTTCCTGATAACTGTTTCAGACCCGCTTCCTCCAGCACCAACAGTTCAAACTCCAGAAAGAGCAATGTGAGCGATCAAAAGGCTAACGCAAACTCCATTGAGAGTACTAATCATCACCACTACTCGCATGTTGACATGACTTCATTCTCTCAAGAAGGCATGGAAATGGCACCAATGGCCTCTAACTTTTCAGATTTTTGGTATCCAAGTGAACTGAGCCAAGGATCATGGGATGATCAACAGTCATGGGATTGGAACAGCAGTGAACTTTCAGCTATATTTAAGAACCCATTAAGGGTGGAAAATGGGTGCATGGATGCATTGTATCCCATCACTGATCACAGTCCTAGTCCAAGTCCAAGCTATGGGCTAATGAATGAAGCTGCTTCTTCTACTACCTGTTCTCCATCACTTCCACCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 1053 0.4625 MSTSRTSDTPFKGYDPTQTQMCLSLLQRNTSPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDNINFHTILSPADVQVQVQVQPLLPPSQFLTNTTHTKQPNHQNTLPKVIHTSNGGNPSPLNNIDVCVETTYGSAQDDSYFFSSDSNSGYLECIVPDNCFRPASSSTNSSNSRKSNVSDQKANANSIESTNHHHYSHVDMTSFSQEGMEMAPMASNFSDFWYPSELSQGSWDDQQSWDWNSSELSAIFKNPLRVENGCMDALYPITDHSPSPSPSYGLMNEAASSTTCSPSLPPFGDVDLGYPLF* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1066 350 MobiDBLite consensus disorder prediction 209 235 - -
Pvu3g1066 350 MobiDBLite consensus disorder prediction 140 167 - -
Pvu3g1066 350 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Pvu3g1066 350 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Pvu3g1066 350 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Pvu3g1066 350 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Pvu3g1066 350 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 350 - -
Pvu3g1066 350 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Pvu3g1066 350 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Pvu3g1066 350 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 350 - -
Pvu3g1066 350 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Pvu3g1066 350 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1066 Pvu-Chr3 25181566 25183062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1066 1 275 AP2-EREBP Transcription Factor Family AT5G18560 40.299 1.69e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu3g1066 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1066 - - gmx:100812047 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1066 3 25181566 25183062 Pvu6g1694 6 27418948 27419898 PCT