Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1063 ATGGCAGATGGAAAAACGTTCAAGAAGCCTCGTCGTCCTTATGAGAAGGAGCGTCTAGACGTGGAGTTGAAGCTAGTGGGAGAGTACGGGCCTCGATGCAAGGAGTTGTTGAGGGTTCAGTACTTCCCTATTCGCATCCGCAACAACGCTTGTAACCTCCTCACTTTCGACAAGAAGAACCCACGCCGAATCTTTGAGGGCGAGGCTCTCCTCCGTCGCATGTTTTGCTACAATCTCCTCGACGAGATTCAGAACAAACTCGATTACGTCCTTGCACTCACTGTCGAGAACTTCCTAGAGTGCCGCCTCTAG 312 0.5128 MADGKTFKKPRRPYEKERLDVELKLVGEYGPRCKELLRVQYFPIRIRNNACNLLTFDKKNPRRIFEGEALLRRMFCYNLLDEIQNKLDYVLALTVENFLECRL* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1063 103 SMART Ribosomal_S4_2 4 100 IPR001912 GO:0019843
Pvu3g1063 103 PANTHER 30S 40S RIBOSOMAL PROTEIN 4 103 IPR022801 -
Pvu3g1063 103 Pfam Ribosomal protein S4/S9 N-terminal domain 4 100 IPR001912 GO:0019843
Pvu3g1063 103 PANTHER RIBOSOMAL PROTEIN S9, PUTATIVE, EXPRESSED-RELATED 4 103 - -
Pvu3g1063 103 SUPERFAMILY Alpha-L RNA-binding motif 5 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1063 Pvu-Chr3 25140912 25141223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1063 4 103 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 83.168 9.71e-51 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1063 K02997 - gmx:100810569 164.851