Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1058 ATGGGGAGGCCGTCCAAGGCTCAGGTTTCTAACAACTCAACCTCCGATGAAGAGGAGGAGGACGTCGCCGCCGCTGAAAACCACCAGATCGAAGATGATGATGAGGAGCTTGAAGCTGTGGCGCAATCCGCTAGCTCTGACGAGGACGAGGATGATAATTCCCCTGACGAAGCCGTCGATGACGACGAAGACAATAAGCAGGATGAGAGTACTGTTGATCCTGAAGTTGGCAAGCGTGAGAAGGCCAGGTTGAAAGAAATGCAACAGTTGAAGAAACAGAAGGTTCAGGAGATATTGGACGCTCAAAACTCTACCATTGATGCTGATATGAATAATAAAGGAAAAGGCCGATTGAAGTTTCTCCTCCAGCAAACTGAACTGTTTGCCCATTTTGCTAAGGGTGATCAATCTTCTCAAAAGAAAGCAAAAGGAAGGGGTCGCCATGCATCAAAGGTCACCGAAGAAGAGGAAGATGAAGAATACCTGAAAGGGGAAGAAGATGGTCTATCCAACACCCGGCTGGTGTCTCAACCTTCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTGATACGATTGTATGAGAATGGCATAAATGGAATTCTAGCAGATGAAATGGGGCTTGGAAAAACCTTGCAAACTATATCTTTGTTAGGCTACTTACATGAGTTCAGAGGAATAAAAGGCCCTCATATGGTAGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGTCGCTTCTGTCCTGTTTTACGTGCTATAAAGTTCCTTGGCAACCCTGATGAAAGGAAGCACATAAGAGAAGAGTTACTCGTTGCTGGTAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGGCGATTTAGTTGGCGCTACATTATTATTGATGAGGCACATCGAATCAAGAACGAGAACTCTCTCCTGTCAAAAACAATGAGGCTATACAACACAAACTATCGTCTCCTCATTACTGGCACACCATTACAGAATAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTTTACCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACAAGAAGTTGTTCAACAACTACACAAGGTCCTCCGTCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAAAAAGGGCTGCCACCAAAAAAAGAAACCATTCTCAAGGTAGGCATGTCACAAATGCAGAAACAGTATTATAAGGCATTACTGCAGAAGGATCTGGAGGTTGTTAATTCAGGTGGAGAACGGAAACGTCTCCTAAATATTGCGATGCAACTACGAAAATGTTGTAATCACCCGTATCTCTTTCAAGGTGCTGAACCTGGTCCTCCCTTTACAACTGGAGACCATCTCATTACAAATGCTGGTAAAATGGTTCTTCTGGATAAGTTACTTCCTAAACTAAAAGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATCTTATTTTTCGAGGATACCAATATTGTCGCATAGATGGTAATACTGGTGGAGAGGATCGGGATGCTTCCATTGAGAACTTCAACAAACCAGGAAGTGAAAAATTTGTTTTCTTGTTGTCTACTCGGGCAGGAGGCCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGTGACTGGAACCCACAAGTTGATCTGCAAGCTCAGGATCGTGCTCATAGGATTGGCCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACTGAGTATACAATAGAGGAAAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGCCGATTAGCTGAGCAGAAAACTGTAAATAAAGATGAGTTGCTTCAAATGGTTAAATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACTATTACAGATGAAGATATTGACAGAATTATTGCGAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACAGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGATGATGAGAAGGATGAAAACAAATTTGATTTTAAAAAAATTGTGAGTGAAAACTGGGTGGAGCCACCAAGAAGAGAACGGAAACGCAATTATTCAGAGTCCGACTATTTCAAGCAAACAATGCGTCAAGGTGCTCCAACTAAACCTAAAGAGCCACGCATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTTAGTGAGCTGTATGAAAAGGAAGTTCGCTACCTCATGCAAACACATCAGAAGAATCAGTTGAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTTGGAGATCCATTAACTGCTGAAGAATTAGAAGAGAAGGAACAGTTGCTCGAAGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAGAAGTATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTCAGGAGGAGGTCGAAAGATATGCAAAAGTCTTCAAAGAAAGATACAAGGAGTTAAATGATTATGATAGAATTATTAAAAACATCGAAAGAGGGGAGGCGAGAATATCTCGGAAAGATGAAATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTATAAGAATCCTTGGCTAGAATTGAAGATACAATATGGACAGAACAAAGGGAAGTTATACAACGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGTAATTGGGATGAGTTGAAGGCAGCTTTTCGTATGTCTCCCTTATTTCGTTTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAACTTACAAGGAGGTGTGACACCCTCATTCGGCTGGTAGAGAAGGAAAATCAAGAGTATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAACTCGCGGCCAAGAGCATGACCCCGTCGAAGCGTTCCATGCCTAGACAGACCGAGAGTCCCTCTTTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTAAGCTCGGGGAAGAAGAAAAAATAA 3183 0.4147 MGRPSKAQVSNNSTSDEEEEDVAAAENHQIEDDDEELEAVAQSASSDEDEDDNSPDEAVDDDEDNKQDESTVDPEVGKREKARLKEMQQLKKQKVQEILDAQNSTIDADMNNKGKGRLKFLLQQTELFAHFAKGDQSSQKKAKGRGRHASKVTEEEEDEEYLKGEEDGLSNTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNSGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLIFRGYQYCRIDGNTGGEDRDASIENFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVKFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWVEPPRRERKRNYSESDYFKQTMRQGAPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIKSIASEMEGKTQEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAAKSMTPSKRSMPRQTESPSLKKRKQLTMDDYLSSGKKKK* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1058 1060 Pfam SNF2-related domain 198 465 IPR000330 GO:0005524|GO:0140658
Pvu3g1058 1060 MobiDBLite consensus disorder prediction 1007 1024 - -
Pvu3g1058 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 400 IPR027417 -
Pvu3g1058 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 683 IPR027417 -
Pvu3g1058 1060 MobiDBLite consensus disorder prediction 70 88 - -
Pvu3g1058 1060 SMART helicmild6 516 600 IPR001650 -
Pvu3g1058 1060 SUPERFAMILY Homeodomain-like 891 1013 IPR009057 -
Pvu3g1058 1060 Gene3D ISWI, HAND domain 737 835 IPR036306 GO:0003677|GO:0006338|GO:0031491
Pvu3g1058 1060 Gene3D - 836 890 - -
Pvu3g1058 1060 MobiDBLite consensus disorder prediction 1036 1060 - -
Pvu3g1058 1060 MobiDBLite consensus disorder prediction 1007 1060 - -
Pvu3g1058 1060 SMART sant 836 885 IPR001005 -
Pvu3g1058 1060 SMART sant 938 999 IPR001005 -
Pvu3g1058 1060 Gene3D iswi atpase 891 923 - -
Pvu3g1058 1060 MobiDBLite consensus disorder prediction 136 157 - -
Pvu3g1058 1060 PANTHER SNF2/RAD54 HELICASE FAMILY 7 1060 - -
Pvu3g1058 1060 Pfam HAND 749 832 IPR015194 GO:0003677|GO:0006338|GO:0031491
Pvu3g1058 1060 Gene3D - 186 401 IPR038718 -
Pvu3g1058 1060 MobiDBLite consensus disorder prediction 14 69 - -
Pvu3g1058 1060 SUPERFAMILY Homeodomain-like 839 889 IPR009057 -
Pvu3g1058 1060 Coils Coil 84 104 - -
Pvu3g1058 1060 Gene3D - 406 698 IPR027417 -
Pvu3g1058 1060 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 7 1060 - -
Pvu3g1058 1060 CDD DEXHc_SMARCA1_SMARCA5 182 402 IPR044754 GO:0005524
Pvu3g1058 1060 Pfam SLIDE 893 1003 IPR015195 GO:0003677|GO:0005634|GO:0006338
Pvu3g1058 1060 MobiDBLite consensus disorder prediction 133 165 - -
Pvu3g1058 1060 CDD SF2_C_SNF 486 611 - -
Pvu3g1058 1060 MobiDBLite consensus disorder prediction 1 88 - -
Pvu3g1058 1060 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 362 IPR014001 -
Pvu3g1058 1060 Coils Coil 986 1020 - -
Pvu3g1058 1060 Pfam Helicase conserved C-terminal domain 488 600 IPR001650 -
Pvu3g1058 1060 SMART ultradead3 181 373 IPR014001 -
Pvu3g1058 1060 CDD SANT 839 883 IPR001005 -
Pvu3g1058 1060 Gene3D - 924 1027 - -
Pvu3g1058 1060 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 490 641 IPR001650 -
Pvu3g1058 1060 ProSiteProfiles SANT domain profile. 835 887 IPR017884 -
Pvu3g1058 1060 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 748 838 IPR036306 GO:0003677|GO:0006338|GO:0031491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1058 Pvu-Chr3 24827856 24837011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1058 206 627 RAD5 or RAD16-like Gene Family AT1G02670 27.129 6.58e-43 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu3g1058 SNF2_N 1.1e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1058 K11654 - gmx:100791510 1992.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1058 3 24827856 24837011 Pvu3g1058 3 24827856 24837011 ECH
Pvu3g1058 3 24827856 24837011 Pvu6g1685 6 27339665 27350967 PCT