Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1056 ATGGAAGGCTCTGTCAACGAACGTCTTGATTTTGGGAAGACGGAATATGGGTGCAAGCATTACCGGAGAAGATGCAGGATTCGTGCCCCCTGCTGCAACGAGATCTACTCGTGCCGTCACTGTCACAACGAGGAAGCGAGTTTGTCGAAGAATTCGTTTGATCGCCACGAACTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACCGAGCAGTCTGTTGCTCAAGTTTGCACTAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTCGATGATGATGCAGAGAAACAACAGTTTCACTGTGATGATTGCGGGATCTGCAGGGTCGGTGGTCGAGAAAATTTCTTCCACTGCAAGAAGTGTGGGTCTTGTTATGCAGTTGGTCTGCGTGATAATCATTTATGCGTGGAGAACTCAATGAGGCATCACTGCCCCATTTGTTATGAGTACCTTTTTGATTCATTGAAAGACACCGTTGTTATGAAGTGTGGTCACACAATGCACCAAGAATGTTACCACGAGATGATAGAACGTGACAGATATTGCTGTCCCATATGCTCCAAGTCGGTGGTGGACATGTCTAGTGTGTGGAAGAGAATTGATGAAGAGATTGAAGCATCTATCATGCCTGAAGATTATCGATACAGAAAGGTTTGGATTCTATGTAACGACTGCAATGACACAACAGAAGTTAACTTCCACATTCTTGGCCATAAATGCGGTCATTGCAATTCATATAATACTCGCTCAATTGCGCCTCCAGTTCTTCCTCAATGA 804 0.4428 MEGSVNERLDFGKTEYGCKHYRRRCRIRAPCCNEIYSCRHCHNEEASLSKNSFDRHELVRQDVKQVVCSVCDTEQSVAQVCTNCGVKMGEYFCNICKFFDDDAEKQQFHCDDCGICRVGGRENFFHCKKCGSCYAVGLRDNHLCVENSMRHHCPICYEYLFDSLKDTVVMKCGHTMHQECYHEMIERDRYCCPICSKSVVDMSSVWKRIDEEIEASIMPEDYRYRKVWILCNDCNDTTEVNFHILGHKCGHCNSYNTRSIAPPVLPQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1056 267 SUPERFAMILY CHY zinc finger-like 13 87 IPR037274 GO:0008270
Pvu3g1056 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Pvu3g1056 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 267 - -
Pvu3g1056 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 226 IPR013083 -
Pvu3g1056 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Pvu3g1056 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 267 - -
Pvu3g1056 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Pvu3g1056 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Pvu3g1056 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Pvu3g1056 267 Pfam Ring finger domain 152 195 IPR001841 -
Pvu3g1056 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Pvu3g1056 267 Gene3D - 227 262 - -
Pvu3g1056 267 SUPERFAMILY RING/U-box 152 202 - -
Pvu3g1056 267 SMART ring_2 153 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1056 Pvu-Chr3 24803372 24807416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1056 2 266 C2H2 Transcription Factor Family AT3G18290 38.710 7.66e-56 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1056 K10144 - gmx:100792038 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1056 3 24803372 24807416 Pvu3g1056 3 24803372 24807416 ECH
Pvu3g1056 3 24803372 24807416 Pvu6g1683 6 27326977 27330404 PCT