Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1054 ATGCAAGGTGACACTACAGAAAAGGAAACTGAAGAAACTCACTCTACCATGCCACCCCTCTCTGAAATCCCACCTTCTTCTTTTCTTCACCCTTCAACCATTGCTGAAAACACTGCTAACACCACCTCCAGAAAGCGTGTTAAGAGAATAATGGGTCAGACCAATTGCCAGAGCCTTAACATTGAACGTGAAAGAAGGTCCAAGATGACTCAAATGTTCACTCAGCTTCAAACCTCCGTCCCTGGTCTCTTACCTCAGGCTACAAGAGAAGTGATAATAAACGAGACAATTGGGTACATAAAAGAGCTTGAGAAGAAGAAGCAGAGACTGGAGGAGTTGAAGGAGACTATGAAAGGAGTAGAAGAGTCCGCGGTTGAATGTGGTAACAGCAACAGAAATTGTTCAATCATGGTTACTGTTTCTGCTAATGTTGCATTCTTTGGTATTCAATGGGTGCCTCGACCAGGTTTGGTGACACAAATTTTAAAGGTGTTTTGCAATCACCAAGCAGATATTTTGGCTGCAAATGTGTCTGTTAATAATGGGAAATTGATTTTGGCAATCACAGCTTTGGTGCAAAATAATGGAAAGTGTGTGGTTGAAAATATTAAAAGAGAAATTATGGGTTTGTAG 633 0.4107 MQGDTTEKETEETHSTMPPLSEIPPSSFLHPSTIAENTANTTSRKRVKRIMGQTNCQSLNIERERRSKMTQMFTQLQTSVPGLLPQATREVIINETIGYIKELEKKKQRLEELKETMKGVEESAVECGNSNRNCSIMVTVSANVAFFGIQWVPRPGLVTQILKVFCNHQADILAANVSVNNGKLILAITALVQNNGKCVVENIKREIMGL* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1054 210 Pfam Helix-loop-helix DNA-binding domain 61 104 IPR011598 GO:0046983
Pvu3g1054 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 103 IPR011598 GO:0046983
Pvu3g1054 210 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 11 208 - -
Pvu3g1054 210 Coils Coil 93 123 - -
Pvu3g1054 210 Gene3D - 56 119 IPR036638 GO:0046983
Pvu3g1054 210 MobiDBLite consensus disorder prediction 1 15 - -
Pvu3g1054 210 MobiDBLite consensus disorder prediction 16 44 - -
Pvu3g1054 210 SMART finulus 59 109 IPR011598 GO:0046983
Pvu3g1054 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 118 IPR036638 GO:0046983
Pvu3g1054 210 MobiDBLite consensus disorder prediction 1 44 - -
Pvu3g1054 210 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 11 208 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1054 25 111 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.559 6.33e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g1054 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1054 - - gmx:102670256 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1054 3 24718206 24719153 Pvu3g1054 3 24718206 24719153 ECH