Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1050 ATGGGGTGTGTGTTTGGGAAAGGAGCGTCAAGGAGGAAAGAGGAAGTGAAAGTTGAAATAGCAGAAGAGTGTGCTGTTCAGAACGGTGGGAATGTTAAGGAGGGTGGAGAAGAGGAAAAGAGCAAGCCCCCAAAAGGGGAGAGAAGGCGATCCTCGAAGCCGAATCCAAGGTTAAGCAATCCACCTAACCATGTGCATGGTGAGCAAGTAGCTGCAGGGTGGCCCTCTTGGCTCTCCAAGGTTGCTGGCGAAGCTATAAATGGGTTGATCCCTAGAAGAGCCGACACTTTTGAAAAGCTGAATAAGGTTGGACAAGGTACTTATAGCAATGTTTACAAAGCAAAGGATACCTTGACAGGGAAAATTGTTGCCCTAAAGAAGGTCCGCTTTGACAATTTAGAGCCGGAGAGTGTCAAATTCATGGCCAGAGAGATCCTTATTCTGCGCCATCTGGATCATCCCAACGTTGTCAAACTGGAAGGTTTAGTGACTTCAAGGATGTCATGCAGTTTGTACCTTGTGTTTGAATACATGGAGCATGATTTGGCTGGACTTGCTACAAGTCCAACAGTAAAGTTCACAGAGTCTCAGGTTAAATGTTATATGCATCAGCTACTTTCTGGACTGGAACACTGTCACAACCGTCATGTGTTGCATCGTGATATAAAGGGGTCAAACCTTCTTATTGACAACGAAGGAATTCTTAGGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCAAAAGCACCCTATGACCAGCAGGGTGGTTACTTTATGGTATCGTCCTCCAGAGCTTCTCCTTGGAGCCACTGATTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGCAAGCCTATTATGCCTGGTCGAACCGAGGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGATGAATATTGGAAAAAGTCAAAGCTGCCACATGCTACCATTTTTAAGCCCCGACAATCATACAAGAGGTGCATAGAAGAGACATTTAAGAATTTCCCAGCATCATCTCTGCCACTAACTGAGACCCTTCTTGCAATCGATCCAGCTGAACGCCAAACTGCCACAGCTGCATTACAGAGTGAATTCTTTACTACAAAACCTTATGCCTGTGAACCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATACAAAATTGCGGGATGAAGAAGCTAGAAGATTGAGGGCTGCTAACAAAACTAACGCTGGTGTGAAGAAATCACGTCCACGTGATAGAGGTGGAAGGGGAATTCCAATTCCAGATTCCAGTGCTGAGTTGCAAGCAAATATTGATAGATGGCGACTGGTAACACATGCAAATGCCAAGAGCAAGAGTGAAAAGTTTCCTCCACCTCATGAAGATGGAACTCTAGGCTATCCTTTGGGTTCTTCACGTCACATGGATCCAATTTTTGATCCTCCTGATGTTCCATTTAGTTCCACAAACTTGTCATATCCTAAATCAAATATCCAGACCTGGTCTGGTCCATTAATGGAAACTAGTGTGGATGCACCAAGAAGAAAGAAGAAGATGGCAGGGAATGGGAATGGGCGCACACATTCAAAGAAGGAATCTTATAGATAG 1644 0.4477 MGCVFGKGASRRKEEVKVEIAEECAVQNGGNVKEGGEEEKSKPPKGERRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLIPRRADTFEKLNKVGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRHLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLATSPTVKFTESQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGILRIADFGLASFFDPNQKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKSKLPHATIFKPRQSYKRCIEETFKNFPASSLPLTETLLAIDPAERQTATAALQSEFFTTKPYACEPSSLPKYPPSKEMDTKLRDEEARRLRAANKTNAGVKKSRPRDRGGRGIPIPDSSAELQANIDRWRLVTHANAKSKSEKFPPPHEDGTLGYPLGSSRHMDPIFDPPDVPFSSTNLSYPKSNIQTWSGPLMETSVDAPRRKKKMAGNGNGRTHSKKESYR* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1050 547 Gene3D Transferase(Phosphotransferase) domain 1 180 421 - -
Pvu3g1050 547 MobiDBLite consensus disorder prediction 498 518 - -
Pvu3g1050 547 MobiDBLite consensus disorder prediction 33 54 - -
Pvu3g1050 547 MobiDBLite consensus disorder prediction 418 444 - -
Pvu3g1050 547 SUPERFAMILY Protein kinase-like (PK-like) 92 386 IPR011009 -
Pvu3g1050 547 PANTHER OS01G0367700 PROTEIN 42 531 - -
Pvu3g1050 547 MobiDBLite consensus disorder prediction 24 68 - -
Pvu3g1050 547 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Pvu3g1050 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Pvu3g1050 547 Gene3D Phosphorylase Kinase; domain 1 86 179 - -
Pvu3g1050 547 ProSiteProfiles Protein kinase domain profile. 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1050 547 MobiDBLite consensus disorder prediction 498 547 - -
Pvu3g1050 547 PANTHER CELL DIVISION PROTEIN KINASE 42 531 - -
Pvu3g1050 547 SMART serkin_6 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1050 547 Pfam Protein kinase domain 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1050 547 CDD STKc_CDK9_like 97 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1050 Pvu-Chr3 24616856 24621740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1050 92 419 Core Cell Cycle Gene Families AT5G10270 51.744 1.23e-115 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pvu3g1050 Pkinase 9.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1050 K08819 - gmx:100791757 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1050 3 24616856 24621740 Pvu6g1677 6 27302676 27307841 PCT