Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1048 ATGGATGATGGGTTGGAGCAGAGTTGGTGGGCCAACATGCCCCACGAGCTTCTCAGAGAGGTTCTCCTCCGAATTGAGTCGTCGGAGGCCAAGTGGCCACCGCGGAGAAGCGTGGTGGCTTGTGCCGGAGTGTGCCGCACCTGGAGACTCATCGTCAAGGAGATTGTCAAGCCACCTCAACTCTCTTCCAACATAACATTCCCCATCTCTCTCAAACAGCCTGGCCCAAGGGAACATCTACTTCAGTGCTTCATTAGGCGCAACAGTGGCACACAGACATATTATCTGTTTCTCAGTTTATCTAGTGCACTAGCTGATGATGGGAAGTTCCTTCTAGCTGCGCGTAAGTTCAGACGCCCAACCTGCACAGATTATATTATCTCCCTGGATGCGGATGATATGTCCAGGGAAAGCAGTGCCCACATAGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTCACAATCTACGATAGCCAACTGCCTCATGCAAGGGCAAAGATGACAAAAAGTAGCTCCACTAGGCTGGTGAATCCAAAACAAGTTTCACCTAAGGTCCCTACAGGCAACTACCCAGTTGCCCATATCTCATATGAACTGAATGTATTAGGCTCCAGGGGGCCAAGGAGAATGCATTGTGTCATAGATACCATTCCTGCTTCTGCTATTGAACCAGAAAGGGTAGCTCCTTCACAGACCAGTTATTCTACTAGTAACATAGGTACTTCATTCCCATTTTTTCAGACAAACTCAACTCATCTAGAAAACTCCATATCTGGAGAGCAGAACAATAAAAAAGATGACGTTCTAGTGTTGAAAAATAAGGCTGCCAGGTGGCACGAGCAGATGCAGTGTTGGTGCTTAAACTTTCAAGGGCGAGTGACAATTGCTTCAGTTAAAAACTTTCAGCTGGCTGCTTTGACAGTCAATGGACATGCTGAACCACAAGAGGATGACGTCATCCTCCAATTTGGAAAAGTTGGGAAGGACATGTTTACAATGGATTACCGTTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTCGCTACCACGGTTGCTTGCGAATGA 1083 0.4691 MDDGLEQSWWANMPHELLREVLLRIESSEAKWPPRRSVVACAGVCRTWRLIVKEIVKPPQLSSNITFPISLKQPGPREHLLQCFIRRNSGTQTYYLFLSLSSALADDGKFLLAARKFRRPTCTDYIISLDADDMSRESSAHIGKLRSNFLGTKFTIYDSQLPHARAKMTKSSSTRLVNPKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVIDTIPASAIEPERVAPSQTSYSTSNIGTSFPFFQTNSTHLENSISGEQNNKKDDVLVLKNKAARWHEQMQCWCLNFQGRVTIASVKNFQLAALTVNGHAEPQEDDVILQFGKVGKDMFTMDYRYPISAFQAFAICLSSFATTVACE* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1048 360 ProSitePatterns Tub family signature 1. 290 303 IPR018066 -
Pvu3g1048 360 PANTHER TUBBY-RELATED 4 360 - -
Pvu3g1048 360 SUPERFAMILY Tubby C-terminal domain-like 59 360 IPR025659 -
Pvu3g1048 360 SUPERFAMILY F-box domain 4 53 IPR036047 GO:0005515
Pvu3g1048 360 Pfam Tub family 71 355 IPR000007 -
Pvu3g1048 360 Gene3D Tubby Protein; Chain A 68 360 IPR025659 -
Pvu3g1048 360 PRINTS Tubby superfamily signature 125 141 IPR000007 -
Pvu3g1048 360 PRINTS Tubby superfamily signature 141 165 IPR000007 -
Pvu3g1048 360 PRINTS Tubby superfamily signature 190 217 IPR000007 -
Pvu3g1048 360 PRINTS Tubby superfamily signature 272 289 IPR000007 -
Pvu3g1048 360 PRINTS Tubby superfamily signature 290 306 IPR000007 -
Pvu3g1048 360 PRINTS Tubby superfamily signature 317 336 IPR000007 -
Pvu3g1048 360 PRINTS Tubby superfamily signature 338 360 IPR000007 -
Pvu3g1048 360 Pfam F-box domain 10 56 IPR001810 GO:0005515
Pvu3g1048 360 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1048 Pvu-Chr3 24607072 24610703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1048 3 360 TUB Transcription Factor Family AT2G47900 65.565 4.19e-175 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pvu3g1048 Tub 1e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1048 K19600 - gmx:100794141 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1048 3 24607072 24610703 Pvu3g1048 3 24607072 24610703 ECH
Pvu3g1048 3 24607072 24610703 Pvu6g1674 6 27287280 27292535 PCT