Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1036 ATGGGCAGGTATCGAAGCCGTAGTAGAAGCTATAGCCCTCGGCGTCGAAGCAGGACCCCACCGCCACCGCCACCGCTGCCGCGCGGTCGCAAGCGCTATGTCGACGACCGCTATGGTGACAGCAGGTCATACCGAGACCGCCGCTCACCTCTTCCTTCCGGTTTGCTCGTTCGCAATCTCCCCCTCGATGCCAGGCCTGAGGATCTTAGGATCCCTTTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTACCCAAAAATTACTACACTGGTGAACCGCGAGGCTTTGGATTTGTGAAATATCGATATGGTGAAGATGCAGCTGAGGCAAAACAACATCTTAATCATACTATCATTGGTGGACGCGAAATAAGAATTGTTTTTGCTGAGGAAAACAGGAAAACTCCTCAAGAAATGCGTGTTAGTTCTCGAGGAAGTTCTCGACATGGGGGTGGTAGAAGGAGAAATCGATCTAGATCCCCACAGCGCCGATATCGCTCCTATTCTCGGTCTCCATCACCTGCTAGGGATGATTCAAGGGATGACAGGGGTAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCTCTCTCCCCTAGTGGTGGGAAGGACTACAAGAAGTCCCCTCGTCCCAGGGAGAATGGTCGAAGTCCTGATGACAAGAAGGGTCAGACGCCTAGCAGATCCCAGAGCCCTAGGGGTAATGATCGCAGTCCATCAAGGTCTCGTTCACGGTCATACAGTCCACGCTGA 765 0.5176 MGRYRSRSRSYSPRRRSRTPPPPPPLPRGRKRYVDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRVSSRGSSRHGGGRRRNRSRSPQRRYRSYSRSPSPARDDSRDDRGRDDYYSPERSRSYSRSLSPSGGKDYKKSPRPRENGRSPDDKKGQTPSRSQSPRGNDRSPSRSRSRSYSPR* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1036 254 SUPERFAMILY RNA-binding domain, RBD 55 159 IPR035979 GO:0003676
Pvu3g1036 254 MobiDBLite consensus disorder prediction 1 52 - -
Pvu3g1036 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Pvu3g1036 254 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 254 - -
Pvu3g1036 254 MobiDBLite consensus disorder prediction 209 227 - -
Pvu3g1036 254 MobiDBLite consensus disorder prediction 170 193 - -
Pvu3g1036 254 MobiDBLite consensus disorder prediction 29 47 - -
Pvu3g1036 254 MobiDBLite consensus disorder prediction 130 254 - -
Pvu3g1036 254 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 254 - -
Pvu3g1036 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 125 IPR000504 GO:0003723
Pvu3g1036 254 MobiDBLite consensus disorder prediction 147 164 - -
Pvu3g1036 254 MobiDBLite consensus disorder prediction 228 254 - -
Pvu3g1036 254 Gene3D - 3 141 IPR012677 -
Pvu3g1036 254 SMART rrm1_1 54 127 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1036 Pvu-Chr3 24213232 24217988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1036 45 232 Eukaryotic Initiation Factors Gene Family AT1G22760 25.258 5.96e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1036 K12900 - gmx:100788749 270.781