Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0999 ATGGAGCTTCTAAACCCTAAATACAGAGTCGCAAGTTTTCTAATTTGCGCTTTTTGTGATTGTCGCTTAGTTCTGAACGGAAGAGCACCGGCGCAGCTTCCCTGTGGCTTCTTTTCTCTGTTGTTAGTGACTATGGTGAGGGTTAGCGTGTTGAACGATGCTCTCAAGAGCATGTACAATGCCGAGAAAAGGGGAAAGCGCCAAGTTATGATCAGGCCATCTTCCAAAGTCATCATCAAATTCCTTATGGTCATGCAAAAGCACGGATACATCGGAGAGTTTGAGTATGTTGATGACCATAGGGCTGGTAAAATCGTGGTTGAGTTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCGTTTTGATGTGGGTGTGAAAGAGATAGAACCTTGGACCGCTAGGCTTCTCCCCTCAAGACAGTTTGGGTATATTGTATTGACAACCTCTGCTGGCATTATGGATCATGAAGAGGCCAGGAGGAAAAATGTTGGTGGTAAGGTCCTTGGTTTCTTCTACTAG 525 0.4533 MELLNPKYRVASFLICAFCDCRLVLNGRAPAQLPCGFFSLLLVTMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0999 174 PANTHER OS02G0478600 PROTEIN 45 174 - -
Pvu3g0999 174 PANTHER 40S RIBOSOMAL PROTEIN S15A 45 174 IPR000630 GO:0003735|GO:0005840|GO:0006412
Pvu3g0999 174 Pfam Ribosomal protein S8 51 174 IPR000630 GO:0003735|GO:0005840|GO:0006412
Pvu3g0999 174 Gene3D - 45 113 - -
Pvu3g0999 174 Gene3D - 114 174 - -
Pvu3g0999 174 ProSitePatterns Ribosomal protein S8 signature. 144 161 IPR000630 GO:0003735|GO:0005840|GO:0006412
Pvu3g0999 174 SUPERFAMILY Ribosomal protein S8 48 174 IPR035987 GO:0003735|GO:0005840|GO:0006412
Pvu3g0999 174 Hamap 30S ribosomal protein S8 [rpsH]. 46 174 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0999 Pvu-Chr3 21671660 21673086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0999 45 174 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 96.923 5.84e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0999 K02957 - han:110936430 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0999 3 21671660 21673086 Pvu6g1613 6 26816921 26818563 PCT