Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0987 ATGGCTGAATTCACAGAAAATCTGCAACTTCAAAGCATTAGACCCTCTTCCTTTCCCTTCTTAGACATTGATCCAAGCATGGAACTCTTAAACCAATTCATTGGGATGAACCAACATGTCATAGACAACTCAAACTTGACTATGCACAACTTGATGCCATTCTCCTGTGACACCTTCTTGGGCCCTCAGGAACCTGAGTTTCCAGGAAACTTGGAAGAAAATTTCCCTGCCCTTGTTCATCATGTCAACCACAATGCACTTCCTGTTTCCCTCCCCATTTTCCAAGCAGAAAACAAGATCCATGATGGTAAAAAGAGGAAATCAATGGATCTTCCAGAGACCAGTTCAGCTAACTCAACTCCTGCAGTTTCTGAAAGTGGAAGCAAGAGAAAACATAGTTCTGGCAGAGGAAAGAGAGCAAAAAGCAATGTGACAGAAGAGGAGAAAGCAAAGGAAGTGGTCCATGTGAGAGCCAGAAGAGGTCAAGCTACCGATAGTCATAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTAAGGTGCTTACAGAATATTGTTCCAGGATGTTACAAGACCATGGGTATGGCAGTAATGTTGGATGAAATCATAAACTATGTGCAGTCCTTGCAGCATCAAGTAGAGTTCCTTTCTTTGAAGCTTACTGCAGCAAGTACCTTTTATGACTTCAATTCCGAGACAGATGCTTTAGAAACAATGCAGAGAGCAAGAGCATCAGAGGCAAAAGAGTTAGGGAAGTATAAGAGAGAAGGGTATGGAGGAGTTTCATGCTTTCAACCAAGTTGGCCACTTTGA 822 0.4209 MAEFTENLQLQSIRPSSFPFLDIDPSMELLNQFIGMNQHVIDNSNLTMHNLMPFSCDTFLGPQEPEFPGNLEENFPALVHHVNHNALPVSLPIFQAENKIHDGKKRKSMDLPETSSANSTPAVSESGSKRKHSSGRGKRAKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQRARASEAKELGKYKREGYGGVSCFQPSWPL* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0987 273 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Pvu3g0987 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 272 IPR024097 GO:0006355
Pvu3g0987 273 MobiDBLite consensus disorder prediction 139 168 - -
Pvu3g0987 273 SMART finulus 168 218 IPR011598 GO:0046983
Pvu3g0987 273 MobiDBLite consensus disorder prediction 112 128 - -
Pvu3g0987 273 CDD bHLH_AtBPE_like 152 237 - -
Pvu3g0987 273 Coils Coil 239 259 - -
Pvu3g0987 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Pvu3g0987 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 228 IPR036638 GO:0046983
Pvu3g0987 273 MobiDBLite consensus disorder prediction 102 168 - -
Pvu3g0987 273 Gene3D - 162 224 IPR036638 GO:0046983
Pvu3g0987 273 PANTHER TRANSCRIPTION FACTOR BEE 1 2 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0987 Pvu-Chr3 19512352 19514272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0987 47 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 54.032 1.45e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g0987 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0987 - - gmx:100806942 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0987 3 19512352 19514272 Pvu2g3261 2 47743513 47745376 ECH
Pvu3g0987 3 19512352 19514272 Pvu3g0987 3 19512352 19514272 ECH