Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0986 ATGAGACTTGCCATGTCTACTCCTTCAAAGAGTATCATTTGTTACAGTGAAGAAGATAATGAACTTAGAAGAGGGTCATGGAGTGTTGAAGAGGACAATCTTCTTATCAATTACATTGCCAATCATGGAGAAGGGAGATGGAATTTGCTTGCTATAAGTTCAGGATTAAGGAGAACAGGAAAGAGTTGCAGATTAAGGTGGCTAAATTACCTAAAGCCAGATATTAAACGAGGCAATTTAACCTCAGAGGAGCAGCTTTTGATTTTTGAACTCCACTCAAAGTGGGGTAACAGGTGGTCAAAAATTGCACAACAGCTGCCAGGCAGAACAGACAATGAAATAAAGAACTATTGGAGAACAAGGATTCAGAAACAAGCAAGATATGTGAAATTTGAGACACAGAGAACAACAAGATTTCTAGAATTTGTCAAGGGTCTACAGACGACAAGATATCTTCTTAAAGCACAAGAATCATCTCCTTCAGCCAAGTCACTCCAAGACCAAGAAATTCCTCTCCCTTCTGATGGTGGTTCTCATTATTCATCATTTGGGATTGGGGCAACACCAAAAACACAAATCACTTGCCAGGGAGGTCTCAGTCACTTGAATCAGCATGAACAGAACTCAGACTCTGTACACAACAATGGTTCAAGCATTTCCAATTCAGAATCAGTAAATATGCAAAATATGAGTCAGCATTTGGGGTGCACTACAAATCAATTTCAGGCCTTAGATAACTATGATTTTGGCATCTGTTCATATGATTGTTACAACTTAGATAACAATGCCTATGACATGGATTCCTTCAACCTAACAGCCACAGTGATTGGTTGCCAAATATCAGAAACCAAGTGGCTAAATATGGAATCTGAATGTAGCACAAGGAATAATGATGAATTTTGA 903 0.3865 MRLAMSTPSKSIICYSEEDNELRRGSWSVEEDNLLINYIANHGEGRWNLLAISSGLRRTGKSCRLRWLNYLKPDIKRGNLTSEEQLLIFELHSKWGNRWSKIAQQLPGRTDNEIKNYWRTRIQKQARYVKFETQRTTRFLEFVKGLQTTRYLLKAQESSPSAKSLQDQEIPLPSDGGSHYSSFGIGATPKTQITCQGGLSHLNQHEQNSDSVHNNGSSISNSESVNMQNMSQHLGCTTNQFQALDNYDFGICSYDCYNLDNNAYDMDSFNLTATVIGCQISETKWLNMESECSTRNNDEF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0986 300 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 282 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pvu3g0986 300 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Pvu3g0986 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 71 IPR017930 -
Pvu3g0986 300 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 5 282 - -
Pvu3g0986 300 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Pvu3g0986 300 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Pvu3g0986 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Pvu3g0986 300 CDD SANT 81 120 IPR001005 -
Pvu3g0986 300 Gene3D - 21 77 - -
Pvu3g0986 300 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Pvu3g0986 300 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Pvu3g0986 300 MobiDBLite consensus disorder prediction 204 223 - -
Pvu3g0986 300 CDD SANT 26 71 IPR001005 -
Pvu3g0986 300 SMART sant 76 124 IPR001005 -
Pvu3g0986 300 SMART sant 23 73 IPR001005 -
Pvu3g0986 300 Gene3D - 81 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0986 Pvu-Chr3 19496101 19497583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0986 19 164 MYB Transcription Factor Family AT1G68320 64.384 1.25e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g0986 Myb_DNA-binding 3.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0986 K09422 - gmx:100778425 461.84