Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0980 ATGATTAAGGGAGGAAGTCCTAACGTTAAAGAAGCAGCACGTGAGGTGGCACGTGATGCGGTCCCACTTGCCACTCTGTGTTTGTCTTCTAGTGTGTCAGGCTGCTGTCCTGCCCAGCGAATTACTGATATTGAAGAAAATATTGTTCAATCTTCCTGTCCTGCTTCTGCATTGTCTGAATCAGATGGGACCCAACAAAGATCAGTCAAGCGAAACATACAGCAGGTGCACAATGAAGATGTCTCTGAAATTTCTGAAAGTGAAAGTACTCAGAAACAATGTTGTAGTTCGCGGTCTTGTTGTGTGCCAGCTTTAGGAGTCAGCAGGAACAATTTGGGGCTGGGTTCACTCACTACAACCAAGTCCTTACGCTCTTTATCCTTCACTGCTTCTGCCCCGTCCATTAATTCTAGTCTTTTCATATGGGAAACTGACAACAGCTCAAGTGATGTTGGCTCTACAGAAAGACCAATAGATACCATATTTAAATTCCATAAAGCCATACGCAAAGATTTGGAGTATTTAGACGTTGAATCTGGAAAGCTTTCTGATGGTGATGAAACAATTATTCGGCAATTTAGTGGAAGATTCCGGCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCTGCACTCGAATCCAAAGAGGCACTTCATAATGTCAGCCACTCTTATACCTTGGATCATAAGCAGGAGGAAAAATTACTCAAAATGATGGACACATGGAAACAGGCAACCAAAAACACCATGTTCAATGAATGGCTAAATGAATGCTTGAAAGAAAGTCCTGTATCTACAACACAGGCAGAAGCTTCCGAGCGTAGCACTTCTCAAAGAGGTGGTGATTATCAGGAAAGCTTGAACCTGAATGATCAGATGTTCAAGCCAGGTTGGAAAGACATTTTCCGGATGAATCAGAATGAACTTGAGTCAGAAATCCGGAAGGTCTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTAATGACAAGTCGCTGGATAGCTGCCCAACAGAAGTTACCTAAGGCTCCATCTGGGGAATCATCCAGTAAACAAATAGAAGGATGCTCACCATCTTTTCGGGACCCAGAGAAACAAATATTTGGTTGTGAGCACTATAAGCGAAATTGCAAGCTTCGAGCTGCTTGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGCAAGCGACCACTCAATGGATAGAAAAGCAACAATGGAAATGATGTGTATGCGGTGCCTTACTATACAGCCTGTTGGGTCTGTATGCATATCTCCTTCATGTGATGGACTTACAATGGCGAAGTACTATTGCAACATTTGCAAATTCTTTGATGATGAAAGGAATGTTTATCACTGCCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGAATTGATTATTTTCATTGTATGAAATGCAATTGTTGCCTGGGGATAAAATCAGCCTCTCATAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGTGATGACTTGTTCACATCAAGCGCAACAGTGAGAGCTTTACCATGTGGGCATTACATGCATTCATCTTGCTTTCAGGCATACACTTGTAGTCACTACACGTGTCCAATCTGCAGCAAATCATTGGGAGATATGGCGGTTTACTTTGGTATGCTCGATGCTTTATTGGCCGCTGAGGAGCTTCCTGAAGAGTACCGGGACCGCTATCAGGATATACTCTGCCATGACTGTGACCGAAAGGCCACTTCACGCTTCCACTGGCTATATCACAAATGTGGATCTTGTGGCTCATACAATACCCGGGTAATCAAGAGTGAGGCAACAAATTCTAGCTGCATTTAG 1887 0.4266 MIKGGSPNVKEAAREVARDAVPLATLCLSSSVSGCCPAQRITDIEENIVQSSCPASALSESDGTQQRSVKRNIQQVHNEDVSEISESESTQKQCCSSRSCCVPALGVSRNNLGLGSLTTTKSLRSLSFTASAPSINSSLFIWETDNSSSDVGSTERPIDTIFKFHKAIRKDLEYLDVESGKLSDGDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLLKMMDTWKQATKNTMFNEWLNECLKESPVSTTQAEASERSTSQRGGDYQESLNLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKAPSGESSSKQIEGCSPSFRDPEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDNASDHSMDRKATMEMMCMRCLTIQPVGSVCISPSCDGLTMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGIDYFHCMKCNCCLGIKSASHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCHDCDRKATSRFHWLYHKCGSCGSYNTRVIKSEATNSSCI* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0980 628 CDD Hr-like 159 243 - -
Pvu3g0980 628 Pfam Zinc-ribbon 559 616 IPR039512 -
Pvu3g0980 628 Pfam CHY zinc finger 383 458 IPR008913 GO:0008270
Pvu3g0980 628 Gene3D nmb1532 protein domain like 153 280 - -
Pvu3g0980 628 MobiDBLite consensus disorder prediction 355 369 - -
Pvu3g0980 628 Gene3D - 583 625 - -
Pvu3g0980 628 Pfam Hemerythrin HHE cation binding domain 157 254 IPR012312 -
Pvu3g0980 628 ProSiteProfiles Zinc finger CTCHY-type profile. 448 511 IPR017921 -
Pvu3g0980 628 Pfam Ring finger domain 511 553 IPR001841 -
Pvu3g0980 628 PANTHER CHY ZINC FINGER PROTEIN 244 628 - -
Pvu3g0980 628 PANTHER CHY ZINC FINGER PROTEIN 25 243 - -
Pvu3g0980 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 556 IPR013083 -
Pvu3g0980 628 MobiDBLite consensus disorder prediction 55 84 - -
Pvu3g0980 628 CDD RING-H2_Pirh2 511 554 - -
Pvu3g0980 628 SUPERFAMILY Zinc hairpin stack 449 505 IPR037275 -
Pvu3g0980 628 MobiDBLite consensus disorder prediction 352 371 - -
Pvu3g0980 628 ProSiteProfiles Zinc finger CHY-type profile. 376 445 IPR008913 GO:0008270
Pvu3g0980 628 SUPERFAMILY CHY zinc finger-like 375 440 IPR037274 GO:0008270
Pvu3g0980 628 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Pvu3g0980 628 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 244 628 - -
Pvu3g0980 628 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 243 - -
Pvu3g0980 628 MobiDBLite consensus disorder prediction 55 72 - -
Pvu3g0980 628 MobiDBLite consensus disorder prediction 271 291 - -
Pvu3g0980 628 SMART ring_2 512 553 IPR001841 -
Pvu3g0980 628 ProSiteProfiles Zinc finger RING-type profile. 512 554 IPR001841 -
Pvu3g0980 628 SUPERFAMILY RING/U-box 510 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0980 Pvu-Chr3 19455085 19461272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0980 200 627 C2H2 Transcription Factor Family AT3G18290 69.444 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0980 K16276 - gmx:100791354 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0980 3 19455085 19461272 Pvu2g3270 2 47797468 47807211 ECH
Pvu3g0980 3 19455085 19461272 Pvu3g0980 3 19455085 19461272 ECH