Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0970 ATGGCACAACAGCTATTACCGACCTCATATCCACCTCAATATGTATCGCTTGGGCGGGTCAGTATTTCGAAGCCATCGATATGGGTAACGAAACCGACTATCGTTTCTTCACCATCATTTTCTACCTCAGCTCCTCTTCGCTATGCGTCGTTTTGCTGCAGCTCTAGCGTTACCTCTTCTGTCGAATCCAATTTACCCTCCTCAGCAAAAATCTTCGTCAAAGGGCTACCTCACTCAGCCTCTGAAGGAAGATTGATGAAGGTGTTTTCAGAATTTGGGGAAGTTAATTTAGTCCAGCTTCCAATAGATGAAGAATCTGGACAGTCTTTAGGATTTGCATTTATTTGGTTTGTGAAGGAAGAGTCTGCACAGCTGGCTATTCAAGAGATGAATGGAAAGTTTTTTGATGGCAGATTTATTTATGTTACAATTGCAAAGCCTGGTTCATCAAAAAAATTGAAGGGGACAACAGCCTACAAATTTTAG 486 0.4177 MAQQLLPTSYPPQYVSLGRVSISKPSIWVTKPTIVSSPSFSTSAPLRYASFCCSSSVTSSVESNLPSSAKIFVKGLPHSASEGRLMKVFSEFGEVNLVQLPIDEESGQSLGFAFIWFVKEESAQLAIQEMNGKFFDGRFIYVTIAKPGSSKKLKGTTAYKF* 162
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0970 161 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Pvu3g0970 161 SMART rrm1_1 70 143 IPR000504 GO:0003723
Pvu3g0970 161 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 17 161 - -
Pvu3g0970 161 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 17 161 - -
Pvu3g0970 161 Gene3D - 53 156 IPR012677 -
Pvu3g0970 161 SUPERFAMILY RNA-binding domain, RBD 62 150 IPR035979 GO:0003676
Pvu3g0970 161 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pvu3g0970 Pvu-Chr3 19253244 19256492 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0970 71 147 Eukaryotic Initiation Factors Gene Family AT3G11400 38.961 2.23e-11 58.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0970 - - gmx:100791917 186.422
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0970 3 19253244 19256492 Pvu3g0970 3 19253244 19256492 ECH