Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0949 ATGGAACTTTCGAGTCAAGAAGGAGAAATACCAATCCCAATAAACAGCGCTACATATGGTGGGGGACATGGTAATGGACACGGTCATGGTCTCATGATTCACCATGACCCTCCACACCATAACCACGACCACATTATCTCCTCCACGGCGCCTTCGAACGGCACACCTACTATGCAGCAGGAGGATCATGGGTACAAGAAAATGGTGAGGTACAGGGAATGCCTGAAGAACCACGCTGCGGCCATGGGAGGGAATGCCACTGATGGGTGCGGCGAGTTCATGCCGAGTGGAGAAGAAGGCACCATAGAGGCACTGAACTGCTCAGCCTGCCATTGCCACAGAAACTTCCACAGAAAGGAAGTGGAGGGAGAGGCCGCTTCATGTGACTACCACCCCTTCAACAGAAGAAGACTCATTCTGGGCCCTCACAAGAACCTCCTCCCTCCCGAGGCTCTTGGGTACCCTACAGGTAACATCCTTCCTTCTAGAAGTGTCCCACCACACCAGATGATAATGCCCTACAGCATTGGTCACCTCCCTTCAGAGTCTGATGAACAAGAAGACGGTGGAGGAATGGTGCAGCCTAGACCCTCCCAGCTGGTGAAGAAAAGGTTCAGGACAAAGTTCACCCAGGAGCAGAAGGAGAAAATGCTGAACTTTGCTGAGAGGGTTGGGTGGAAAATCCAGAAGCAAGAGGAGTCCGTGGTGCAACAGTTCTGCCAAGAGATTGGGGTTAAGAGAAGAGTGCTCAAGGTTTGGATGCACAACAATAAGCACAATCTCGCAAAAAAGAATCCCCCTACTGCAGCAGCTTAA 816 0.5147 MELSSQEGEIPIPINSATYGGGHGNGHGHGLMIHHDPPHHNHDHIISSTAPSNGTPTMQQEDHGYKKMVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEAASCDYHPFNRRRLILGPHKNLLPPEALGYPTGNILPSRSVPPHQMIMPYSIGHLPSESDEQEDGGGMVQPRPSQLVKKRFRTKFTQEQKEKMLNFAERVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNPPTAAA* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0949 271 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 71 120 IPR006456 -
Pvu3g0949 271 Gene3D - 191 264 - -
Pvu3g0949 271 SUPERFAMILY Homeodomain-like 195 263 IPR009057 -
Pvu3g0949 271 Pfam ZF-HD protein dimerisation region 69 121 IPR006456 -
Pvu3g0949 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 266 - -
Pvu3g0949 271 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 70 121 IPR006456 -
Pvu3g0949 271 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 202 258 IPR006455 -
Pvu3g0949 271 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4-LIKE 37 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0949 Pvu-Chr3 18402379 18404660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0949 1 265 ZF-HD Transcription Factor Family AT1G14440 51.007 1.68e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu3g0949 ZF-HD_dimer 1.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0949 - - gmx:100805652 447.973