Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0945 ATGTCAGAAATGCGGGTGTCCGAGCTTCACTTGAAAAAGGAACTCACCCAAATCCGCAAGGCTGCCCGAGTTCTCAGAGATCCTGGCACCACATCTTCTTGGAAGTCACCACTCAGTTCATCAAGATCCGTGGCTGCATGGAACAGAGACAGTGGAAGTAGAAGGTTCAGCACCACTTCTCAACTTCCCAACAATGAGAAAGAGAAAGAGAAAGAGAAAGAGAAGGAGAAGGAGAGGGAGAAAAAGGTGTTCTTGTATAATTGGAAGAACTACAAATCTTCGAGTGAGAAATACAATGAGGAAGAAGATGACGATGATGGTGATGACGGGGGATCCTCGTCGCTTCTTGGGGACAGAGACAGAGACAGTTTGAGTGATGCTCGCAATGGTTGTGACTCTAAGAGTGATTCATACCTGGCTGCTGGTGGTACTGGTGGCGGTGGCGGCACTCGTTCTTCTATTTTCAGATGTGGGGATGCTAATCTTGTTTCGAGAAGAACCGTCCCCGTTAAGAAAAAGAGTAAGAAAAATAACCCTCATTTAGATTTTTTAGCAAAGTGTCAACAGCATAGACAAACGAATCCAGGAAGAAATTTTGTGAGTTCTTCGAAGGCATTGCTAGAGGGACATTCTTCTTTGCCTTTTTTTAGCAGGGATGAATCTGTTGAGTTCTCTGATGATACCGAGGATTACACTAATTCTGAGGGCGTGAGACCAATTTCGGGGACTTCCCCTTTGCTCTTCAAACTCAGGCAAAAAAATTGGTCACGCTCTTCGTCAAAGTTTTTGAGAAGAAGTCGGAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATAGGTACGGTCACCGTTATCCCAGCACACTTGGATCCTGGGATGGCACCACCACTTCCGTGAATGATGGCGATGGAGATGATGAGATTGATGATCATTTGGATTTGCCTGGCCGCCAAGGATGTGGAATTCCTTGCTATTGGTCCAAGAGGACTCCTAAACATAAAGGGATGTGTGGGAGTTGCTATTCTCCCTCACTGTCCGACACTTTGAGGAGGAAAGGGAGTAGCATGCTCTGTGGGAGTCAAACTATTTATCCCAGACACCGCAGATCGGTTTCGGCCTCTCAGAAGAGAAGACTTTCTCAGAGGAGTGCTCGAGGTGTCATTCCATTACTCACAAACAGTGGTGACGTTAGAGAAGGGTCGTCTGTGGGAACCGGCCGGAGCGATGATGAACTTTCAACAAACTTTGGGGAGCTTGATCTTGAGGGTTTGAGCCGGTTGGATGGAAGAAGGTGGTCATCTAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGGGAAGGGGAAGAGGAGGGAACGCCGGAGAATAGTCGCTGTTTCAGTCAAAAGTATAGGCCAATGTTCTTTGGTGAACTGATTGGCCAGAATATTGTTGTTCAGTCACTTATCAATGCTGTTTCCAGGGGACGCATTGCTCCTGTTTATCTGTTTCAAGGTCCCCGTGGGACTGGCAAAACGTCAACCGCTAGGATATTTTCTGCTGCCTTGAACTGTGCGAGTCCTGATGAAAGTAAACCTTGTGGCTACTGCAGGGAATGCACTGATTGTATTTCTGGTAAGAGCAGTAATCTATTGGAAGTTGATGGAACCAATAAGAGAGGAATTGATAAGGCTAGATATCTCCTGAAAAGATTGTCAACCGGGTCATCGTCAGCCTCACTACAATATACAGTTTTCGTTATTGACGAGTGTCACCTGTTGCCCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTGGAAGAACCACCCCAGCGAGTTGTATTCATATTTATAACATCTGATCTTGACAATGTACCACGGACAATACAATCTCGTTGCCAAAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTGACCAGGTTGAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAGCAGATGCGCTGGACCTCATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAGCTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAACTATTGGAACTTTTGGAATTGGCAATGTCATCGGATACTGTAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCAGGCCTTATCATGGACATCATTGCTGGGTCATATGCAGTCATTGATACCAGACCTGATGATTCATTCTTTGGTGGACGGAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAAAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGAACATCCAGTGAACGCTGTACATGGTTCACAGCAACTCTTTTGCAGCTTGGTTCCACACCTTCTCCTGATCTCACGCAGTCAAGCAGCAGTAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCAAGAGATGTTACCTCTTGCACGCACAAGTCAGACCCTCAATATGTGCCTCGAAAGTCAGCATACACCGGATCCCAGCAAAAGGCAGTAAATGATGATTCCAACCATCAAAAGGAATCAAAGATTGAAGGTTTCAGCTTGAAATCAAAGCCGTCAAACAGCCCAGTCTTAGATGATGGCTCCACAGTTGTATCATCTGATGATCTGATGGTGGAGAATACAATGTATAGGTGCATAGATTCAGGGAAGTTATGTGACATCTGGGTGCATTGTATTGAGAAGTGTCACTCTAAGACATTGAGGCAGCTGCTGCACCATCACGGAAAGCTTGTGTCCGTATGCGAAGTAGAAGGTGTTTTGGTAGCATATATTGCTTTTGGTGACGCAGATATTAAAGTTCGGGCTGAGAGGTTTTTAAGAAGCATTACAAACTCCATGGAAATGGTTCTTAGGCGCAATGTGGAGGTCCGAATAATCCATTTGGCAGATGGGGAAGGTGAAAACAAGGTTAATCTAACAGGTGTAAAGCAGGGTGAGTCAACAGTGGTTTCTGAGAAGGAGCAAAGACAAGGCCATGTGAATGGAACGGAGTCTTATTCTAGTTTGCCTCCTTTACTGGATAGAAACCTTCAATCTAGGACTGCTTCATCGGATGTCTTGGGTGAAGGAAATGGTGGGAGAGAGAGGAAACAGGATAATCCAATGCATAGAATTGAATCCATCATTCGTGAGCAGAGGCTGGAAACTGCATGGTTACAGGCCGTAGAGAAAGGTTCCCCTGGATCATTAAGTCGTTTGAGACCCGAGAAGAATCAAGTACTGCCACAGAATGGTGTAGACCCAATGGAGTCCATGGATTCAACAAGATTTTCCTCTCACCAGCATTGGGAAGATGACCCCAATAATGAACTCAAAGTTTTGACCCTTAAAAATGGAAGGGTCCCACAGAAGGATCAGACTGGTAGAAAGGCAGATCGTTTTCCCATGTCCCCAAGTTTATTGCATGACAACAGTTTAGCAACAATTCCTGGAAAAGAGCATCCGGGATATGAATCGGGGTCAGGAGCTGGTGGTTGTGGATTTTTATGTTGGAATAAGTCGAAGCCGAGAAGGGTAATAAAGGTGAAAGGTGGCACCCCAGTTAGAGCGCGCAGAGGTGCAGGTTTTACGGTGTTTGGTGACTGCGGTAAGCCAAAGAGAAGGGAGCGGAAAAGATAA 3759 0.4493 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNRDSGSRRFSTTSQLPNNEKEKEKEKEKEKEREKKVFLYNWKNYKSSSEKYNEEEDDDDGDDGGSSSLLGDRDRDSLSDARNGCDSKSDSYLAAGGTGGGGGTRSSIFRCGDANLVSRRTVPVKKKSKKNNPHLDFLAKCQQHRQTNPGRNFVSSSKALLEGHSSLPFFSRDESVEFSDDTEDYTNSEGVRPISGTSPLLFKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHKGMCGSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSVSASQKRRLSQRSARGVIPLLTNSGDVREGSSVGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEEEGTPENSRCFSQKYRPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFSAALNCASPDESKPCGYCRECTDCISGKSSNLLEVDGTNKRGIDKARYLLKRLSTGSSSASLQYTVFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTRPDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERCTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDVTSCTHKSDPQYVPRKSAYTGSQQKAVNDDSNHQKESKIEGFSLKSKPSNSPVLDDGSTVVSSDDLMVENTMYRCIDSGKLCDIWVHCIEKCHSKTLRQLLHHHGKLVSVCEVEGVLVAYIAFGDADIKVRAERFLRSITNSMEMVLRRNVEVRIIHLADGEGENKVNLTGVKQGESTVVSEKEQRQGHVNGTESYSSLPPLLDRNLQSRTASSDVLGEGNGGRERKQDNPMHRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQNGVDPMESMDSTRFSSHQHWEDDPNNELKVLTLKNGRVPQKDQTGRKADRFPMSPSLLHDNSLATIPGKEHPGYESGSGAGGCGFLCWNKSKPRRVIKVKGGTPVRARRGAGFTVFGDCGKPKRRERKR* 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 29 63 - -
Pvu3g0945 1252 Pfam DNA polymerase III, delta subunit 484 644 - -
Pvu3g0945 1252 Coils Coil 777 807 - -
Pvu3g0945 1252 CDD AAA 483 641 - -
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 1070 1084 - -
Pvu3g0945 1252 Pfam DNA polymerase III subunits gamma and tau domain III 698 816 IPR022754 GO:0003887
Pvu3g0945 1252 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 195 1190 - -
Pvu3g0945 1252 Gene3D - 461 642 IPR027417 -
Pvu3g0945 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 691 IPR027417 -
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 22 79 - -
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 1025 1084 - -
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 112 129 - -
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 94 154 - -
Pvu3g0945 1252 CDD HLD_clamp_pol_III_gamma_tau 644 707 IPR045085 -
Pvu3g0945 1252 PANTHER PROTEIN STICHEL-LIKE 1 195 1190 - -
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 399 419 - -
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 1162 1184 - -
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 1040 1066 - -
Pvu3g0945 1252 SMART AAA_5 501 651 IPR003593 -
Pvu3g0945 1252 SUPERFAMILY post-AAA+ oligomerization domain-like 715 816 IPR008921 GO:0003677|GO:0006260
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 821 835 - -
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 846 878 - -
Pvu3g0945 1252 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 469 818 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pvu3g0945 1252 Gene3D - 646 707 - -
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 893 908 - -
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 64 79 - -
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 821 908 - -
Pvu3g0945 1252 MobiDBLite consensus disorder prediction 402 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0945 Pvu-Chr3 18336416 18343430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0945 465 759 Core DNA Replication Machinery Family AT1G21690 23.355 5.23e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0945 - - gmx:100814391 2098.94