Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0915 ATGAAGCGCCCAAATGACGACGTCGCCAACACCTCAACGGCGAAGCCAACTTTCCTAACCAAATCCCAACGCGAGCAATTGGCCCTCCAACGCCGCCAGGATGAAGTCGCGGAGCAGAAGCGGCGCCAGGAGCAGCTCCTCTCCCGCAACCACTCCTCTGATCCCAAACCCTCCTCCGACCGCGAAAGAGACAGAGACAGAGACAGAGAAAGGGACAGAGACCGTGACAACAGGGAGCGAGAGCGCGACAGAGATAGGGACAGAGACCGCGAGAGGGCACGTGACCGGGACCGGGACCGCGAACCCGAACGCCGCAACAGAGAGAGGGAACGCGAAGAGGAGACCCGGGCCAGAGAGCGAGCTCGGTCGGATAAACTGGCGGAGCGCGAAAGGACACGTGACCGGGACCGCGAAGCCGAACGCCGCAACAGAGAGAGGGAGCGTGAAGAGGAGACCCGGGCACGCGAGCGAGCTCGCTTGGAGAAACTAGCGGAGCGCGAGCGCGAGAAGGAGCTTGAGTCTATCAAGGAGCAGTACCTGGGTTCGAAAAAGCCGAAGAAACGCGTGATCAAGCCCAGCGAGAAGTTCCGGTTCTCCTTCGACTGGGAGAACACGGAAGACACCTCGCGCGACATGAACGTTCTTTACCAGAACCCCCACGAGGCTCAGCTACTCTTCGGGCGCGGCTTCCGCGCCGGCATGGATCGCCGCGAGCAGAAGAAGCTAGCCGCGAAGAACGAGAAGGACATGCGCGAGCAAATCCGCAAGAAGGACGGCCTCGAGGAGAAGCCCGAGGAGGCAGACGCCCAGCGCCGCAAGGAGGCCGCCGCCGATCTCTACGACACCTTCGACATGCGCGTGGACCGCCACTGGAGCGAGAAGAAGCTCGAGGAGATGACTGAGAGGGATTGGCGCATCTTCAGAGAAGACTACAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGAGGAGCTGGATTGAGAGCAAGTTGAGCCTGGAGCTGTTGAAGGCTGTGGAGAAGGCTGGCTATAAAACCCCTTCTCCTATTCAGATGGCAGCCATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACTGGTTCCGGGAAAACCGCGGCGTTTGTGCTTCCCATGTTGAGCTATATCACCAGGCTTCCTCCCATGAGTGAGGACAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCACAGCAGATTGAGGATGAGACAGTTAAGTTTGCGCAGTATTTGGGCATCAAGGTGGTGTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATCAGGCAGGGCTGTGAGATTGTCATTGCCACTCCTGGACGTTTGATTGATTGCTTGGAGCGGCGCTATGCTGTTCTCAACCAGTGCAATTATGTCGTTCTTGATGAGGCGGATCGCATGATTGACATGGGGTTTGAGCCCCAGGTAATGGGTGTCCTTGATGCCATGCCTTCCAGCAATCTGAAACCGGAGAATGAGGATGAGGAACTTGATGAGAAGAAGATTTACCGGACCACTTATATGTTTAGTGCCACCATGCCCCCTGCTGTGGAGAGGCTTGCCAGGAAATATTTGAGGAACCCTGTTGTGGTCACCATTGGCACTGCTGGAAAGACAACTGATTTGATCAGCCAGCATGTGATCATGATGAAAGAGTCTGAGAAATTTTACAAGCTTCAGAGATTGCTTGACGAGCTTAACGACAAGACTGCGATTGTGTTTGTCAACACCAAAAAGAATGCGGATATGGTTGCCAAGAATTTGGATAAGGAAGGGTATCGCGTGACCACTTTGCATGGAGGGAAGTCGCAGGAGCAGAGAGAGATTAGTCTTGAAGGGTTTAGGACCAAGAGATATAATGTTCTTGTTGCCACTGATGTTGCCGGACGTGGGATTGACATACCTGATGTCGCTCATGTTATTAACTATGATATGCCTGGGAATATTGAAACGTACACTCATCGTATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACAACATTCTTGACTCTTCAGGACAGTGATGTCTTTTATGACCTCAAGCAGATGCTCGTTCAAAGTAACAGTCCTGTTCCACCGGAACTCGCAAGGCATGAAGCTTCGAAATTCAAGCCAGGATCGATTCCTGACAGACCACCTAGACGAAATGACACTGTTTTTGCGCATTAG 2238 0.5424 MKRPNDDVANTSTAKPTFLTKSQREQLALQRRQDEVAEQKRRQEQLLSRNHSSDPKPSSDRERDRDRDRERDRDRDNRERERDRDRDRDRERARDRDRDREPERRNREREREEETRARERARSDKLAERERTRDRDREAERRNREREREEETRARERARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNVLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKDMREQIRKKDGLEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWIESKLSLELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIETYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLVQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0915 745 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 104 738 - -
Pvu3g0915 745 Coils Coil 29 49 - -
Pvu3g0915 745 CDD DEADc_DDX23 336 552 - -
Pvu3g0915 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 356 551 IPR014001 -
Pvu3g0915 745 Coils Coil 243 263 - -
Pvu3g0915 745 MobiDBLite consensus disorder prediction 712 745 - -
Pvu3g0915 745 Gene3D - 556 743 IPR027417 -
Pvu3g0915 745 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 325 353 IPR014014 GO:0003724
Pvu3g0915 745 PANTHER - 104 738 - -
Pvu3g0915 745 MobiDBLite consensus disorder prediction 1 188 - -
Pvu3g0915 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 704 IPR027417 -
Pvu3g0915 745 CDD SF2_C_DEAD 563 692 - -
Pvu3g0915 745 MobiDBLite consensus disorder prediction 241 273 - -
Pvu3g0915 745 MobiDBLite consensus disorder prediction 720 745 - -
Pvu3g0915 745 MobiDBLite consensus disorder prediction 27 184 - -
Pvu3g0915 745 MobiDBLite consensus disorder prediction 7 26 - -
Pvu3g0915 745 Gene3D - 286 555 IPR027417 -
Pvu3g0915 745 SMART ultradead3 344 566 IPR014001 -
Pvu3g0915 745 Coils Coil 104 173 - -
Pvu3g0915 745 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 480 488 IPR000629 -
Pvu3g0915 745 Pfam DEAD/DEAH box helicase 350 540 IPR011545 GO:0003676|GO:0005524
Pvu3g0915 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 578 722 IPR001650 -
Pvu3g0915 745 Pfam Helicase conserved C-terminal domain 577 683 IPR001650 -
Pvu3g0915 745 SMART helicmild6 602 683 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0915 Pvu-Chr3 15608938 15611550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0915 335 719 Eukaryotic Initiation Factors Gene Family AT1G72730 33.420 7.64e-61 209