Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0903 ATGGAAAGTGGAGGCTTTCATGGCTACCGCAAGCTCCCCAACACCACCTCTCCTGGGTTGAAGCTGTCAGTGTCAGACATGAACAACGTGAACACGAGTAGGCAGGTAGCAGGAGACAACAACCACACAGCGGATGAGAGCAACGAATGCACTGTGAGGGAGCAAGACCGTTTCATGCCAATTGCAAATGTGATCAGGATCATGCGAAAGATTCTTCCTCCACATGCCAAGATCTCAGATGATGCCAAAGAAACAATTCAAGAGTGTGTGTCTGAGTACATCAGCTTTATCACCGGAGAGGCAAACGAGCGTTGCCAGAGGGAACAACGCAAGACCATAACTGCTGAGGACGTGCTTTGGGCCATGAGCAAGCTTGGATTTGATGATTACATGGAGCCACTGACCATGTACCTTCACAGGTATCGTGAGCTTGAGGGTGACCGAACCTCCATGAGAGGTGAATCATTGGGGAAGAGGACTATTGAATACGCCCCTATGGGTGTTGGCGTTGCTACTGCTTTTGTGCCACCACAGTTTCACCCAAATGGATACTATGGTCCTGCCATGGGAGCTTACGTTGCGCCACCAAATGCTGCGTCCTCTCATCACCATGGAATGCCAAATACTGAACCGAATGCTCGCTCCATGTGA 651 0.5023 MESGGFHGYRKLPNTTSPGLKLSVSDMNNVNTSRQVAGDNNHTADESNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYMEPLTMYLHRYRELEGDRTSMRGESLGKRTIEYAPMGVGVATAFVPPQFHPNGYYGPAMGAYVAPPNAASSHHHGMPNTEPNARSM* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0903 216 SUPERFAMILY Histone-fold 55 153 IPR009072 GO:0046982
Pvu3g0903 216 Gene3D Histone, subunit A 44 163 IPR009072 GO:0046982
Pvu3g0903 216 ProSitePatterns NF-YB/HAP3 subunit signature. 89 105 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pvu3g0903 216 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 3 172 - -
Pvu3g0903 216 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 122 IPR003958 -
Pvu3g0903 216 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 172 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pvu3g0903 216 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Pvu3g0903 216 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Pvu3g0903 216 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0903 Pvu-Chr3 15010248 15012622 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0903 1 214 CCAAT-HAP3 Transcription Factor Family AT5G47670 57.339 3.35e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu3g0903 CBFD_NFYB_HMF 6e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0903 K08065 - gmx:100194424 336.265