Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0901 ATGGCTGAATCTGATAACGAGTCAGGAGGTGGAAAGAATGAATCGTCAATTTGCAGAGAGCAAGACAGGCTCCTTCCCATAGCCAACGTGGGCAGGATCATGAAGAAGGTGTTGCCAGGCAACGCTAAGATTTCCAAAGAATCAAAAGAAACCATGCAAGAGTGTGTGTCAGAGTTCATCAGTTTTATAACAGGAGAGGCTTCTGATAAGTGTCAGAAAGAGAAAAGAAAGACCATCAACGGGGATGATCTTCTGTGGGCCATGGCCTCACTTGGCTTTGAAGACTATGCAGAGCCGCTCAAAGCTTATCTGCACAAGTACAGAGAGATGGAAGGGGAGAAAACTGCTATGATTGTGAAGCACCATGGTGCTACTGGCCTTTATGCAAATCCACTGTGA 399 0.4586 MAESDNESGGGKNESSICREQDRLLPIANVGRIMKKVLPGNAKISKESKETMQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMASLGFEDYAEPLKAYLHKYREMEGEKTAMIVKHHGATGLYANPL* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0901 132 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Pvu3g0901 132 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Pvu3g0901 132 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Pvu3g0901 132 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pvu3g0901 132 MobiDBLite consensus disorder prediction 1 20 - -
Pvu3g0901 132 SUPERFAMILY Histone-fold 21 122 IPR009072 GO:0046982
Pvu3g0901 132 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Pvu3g0901 132 Gene3D Histone, subunit A 11 126 IPR009072 GO:0046982
Pvu3g0901 132 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 121 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pvu3g0901 132 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0901 Pvu-Chr3 14987814 14988990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0901 1 116 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.632 4.06e-65 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu3g0901 CBFD_NFYB_HMF 2.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0901 K08065 - gmx:100305641 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0901 3 14987814 14988990 Pvu6g1453 6 25454625 25455472 PCT