Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0880 ATGGTTTCTGCGGAGAATGATTCGCATTCCACTTCCGATGAAGCTACTCATACTCATTCCTCACTTTCCAACAAAGCTCACAGAAACATCGGCAAGTCCATGCGAACCGTGCGCTCCAAATTATTCCGACGTGATCACGCCAATTTCGTCTCCGATAGCCTAACCGATTCGCTCATGGAACTCGCCACGCGAAACACCAAGTCCGTTAAATCTTCCGTTACGGAGGACCAACTTCTCGAGCTCTCTCAAGCTTTGAGCGATTTCTCCGCCTGCAGCAGCGATATCTCGGGAGAGCTCCAGAGGCTCGCCACCCTCTCCTCCTCCCAACCTGCTGTTGACGGAGACCGCGAGCCTGAACCTGAGCCCGAGCCTTGCTTAGGCTTTCTCCAACGTGAGAGTTTCTCCACGGAGATAATCGAGAATATCTCGCCGGAGGATCTTCAGCCGACGGTGAAGATCTGCGTCGACGGACTGCTTTCGCCGTCGGTGGCGGTGAAGCGATCGGCGGCGGCGAAGCTGAGGCTGTTGGCCAAGAACAGAGCGGACAACCGCGCTCTGATCGGCGAGTCCGGTGCGGTGCCTGCTCTGGTTCCGCTGCTCCGGTGCAGCGATCCGTGGACGCAGGAGAACGCGGTGACGGCGTTGCTGAATCTGTCTCTTTTTGAGGAGAACAAGGCGCTGATAACGAATGCCGGTGCGGTGAAGTCGCTGATTTACGTGCTTAAAACAGGGACGGAGACTTCGAAGCAGAACGCGGCTTGCGCGCTGATGAGTCTTGCGTTGGTGGAGGAGAACAAGATCTCGATCGGTGCTTGCGGGGCGATACCGCCGCTTGTTTCGCTGCTACTAAGTGGGTCTCACAGAGGGAAGAAGGACGCACTGACGACGCTGTATAAGCTGTGTTCGGTGCGGCAGAACAAAGAGAGGGCGGTGAGCGCGGGAGCAGTGAAGCCGCTGGTGGAGCTGGTGGCGGAGGAAGGGAGCGGGATGGCGGACAAGGCCATGGTGGTGCTGAACAGCTTGGCGGGGATTGAGGAGGGAAAGGAGGCGATCGTGGCAGAAGGTGGTATTGCTGCGCTTGTGGAAGTGATCGAAGATGGGTCGGTGAAGGGGAAGGAGTTCGCTGTTCTGACTCTTGTTCAGCTCTGTGCTCACAGTGTTAGTAACAGAGGCTTGCTTGTGAGAGAGGGTGGGATTCCTCCTCTCGTTGCTCTTTCTCAGAACGGCTCTGTTCGAGCTAAGCACAAGGCTGAGACACTCCTTGGATATTTAAGAGAATCAAGACATGAAGCGTCCTGTTCAAGTCCTTAG 1311 0.5614 MVSAENDSHSTSDEATHTHSSLSNKAHRNIGKSMRTVRSKLFRRDHANFVSDSLTDSLMELATRNTKSVKSSVTEDQLLELSQALSDFSACSSDISGELQRLATLSSSQPAVDGDREPEPEPEPCLGFLQRESFSTEIIENISPEDLQPTVKICVDGLLSPSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQENAVTALLNLSLFEENKALITNAGAVKSLIYVLKTGTETSKQNAACALMSLALVEENKISIGACGAIPPLVSLLLSGSHRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEEGSGMADKAMVVLNSLAGIEEGKEAIVAEGGIAALVEVIEDGSVKGKEFAVLTLVQLCAHSVSNRGLLVREGGIPPLVALSQNGSVRAKHKAETLLGYLRESRHEASCSSP* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0880 436 PANTHER U BOX DOMAIN-CONTAINING 17 432 - -
Pvu3g0880 436 MobiDBLite consensus disorder prediction 1 30 - -
Pvu3g0880 436 SUPERFAMILY ARM repeat 140 425 IPR016024 -
Pvu3g0880 436 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 273 315 IPR000225 GO:0005515
Pvu3g0880 436 Gene3D - 133 434 IPR011989 -
Pvu3g0880 436 Pfam Armadillo/beta-catenin-like repeat 264 302 IPR000225 GO:0005515
Pvu3g0880 436 Pfam Armadillo/beta-catenin-like repeat 182 219 IPR000225 GO:0005515
Pvu3g0880 436 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 191 233 IPR000225 GO:0005515
Pvu3g0880 436 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 17 432 - -
Pvu3g0880 436 SMART arm_5 262 302 IPR000225 GO:0005515
Pvu3g0880 436 SMART arm_5 386 426 IPR000225 GO:0005515
Pvu3g0880 436 SMART arm_5 344 384 IPR000225 GO:0005515
Pvu3g0880 436 SMART arm_5 221 261 IPR000225 GO:0005515
Pvu3g0880 436 SMART arm_5 180 220 IPR000225 GO:0005515
Pvu3g0880 436 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 314 356 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0880 Pvu-Chr3 14278249 14282516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0880 92 429 U-box Gene Family AT2G23140 46.857 2.63e-83 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0880 - - gmx:100792402 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0880 3 14278249 14282516 Pvu6g1480 6 25613364 25616517 PCT