Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0875 ATGTCTATGATTGAAACCCCCGCCGTCCACCACCTCAGCGGGGGCCCCACCGATCACCACCGTCACTCCTCCAAACGAAAACTCGACGAAGAAGATGACGGAGATTTCTCGGACTTAGTCTGTGTGAGGATGCGGAAAGAGGAAGCGGTGAATTCGTGGTCTGGCTCCTCCGGCGCCGCCGGAAGCGGCTGTTCCGCGGCCTTGCAGAAGCAGCGATCGCACATCCAGTTCTTTGTGCGAATGATGTCGGCCGGAAACACGATTGTGATGCAGGCCTTCCCCGAAGACAGCGTGAAATCGATTCACGAGCGTATCCAAAGCATGAAGGGAATCCCGGTGTTTGAACAGAGGCTAATTTATCGAGGCAAGCAGCTTCAGTGGGAGCAGACTCTCGCCGAGTGTTCCATTCAAAACGACGCCAATCTTCAACTCGTTGGTCGTATGCGCAGTACTGAACACCCTCAAGCATGGCAAATTATCAACGACATGGTTTCCCTCGTGTATCGACTCTGCTGTGGTGAGGCTGTTCCCGATTCCTTGAAGACTATCAAGGGGTTAATCACCAATTACTTGAGCATGACTCCGAGGATTGACAACGAATCTGCTTCTGGGTATTTTCAGATTTTCATGTCTTCTTCTGCTCCTGACGTGCTTGTTATGCTCTATGTGTCCCCCTATGCAGGTAACAAGGAATGTGCTGATTCTTGTGTTAGGCACTTTTTGAGTGCTTGCCGGAATACCTTGTCTAAGGCATTGCATGGGCAGTGTGCGTGTGTGGTGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGATGTAATGACCCTTTGTATCTCTATTGTCGGAGTACCTTTGGGTCCTTGTTGGAAACTGCTGGGGTTTCCTACGCTGGTTCTGATAATGCTAAGGGGTTGGTTTTGATTAAGGACATTTTCCCCTTTGTTTTTGAGCTTGCTAATTGCTTGTTGATGGACTTGGAGTCGAGTATGCAATCCCCCACGGCCGAGGGGCCTTTGTCTAATGATATTGTGGATTTTACTGCCTTCTTATTGCCTTTGAGAACTGGAATCAAGGAGCAACAAGCTGTCAACGGTTCTATGGCTGAAGACAAAAACAATAAGGATCTCTTGCACGCCAAAGAGATTGAATATCTTCACTGTTTGTACATTCAGTTATTGAACAAAATCGACCAGTGCCTTCAAAAAATTGACCAGAGCTTGGTTGGCCAGGAAATGATGGAAGGTGATGATCTTTATACTGCGTGGTCTCATTATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGATAAGCTTTGGAGTGTTTTGAGGCTACATAAAAGTGTTCTGTGTCTGTTGATTGTTCGATATGCAAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCATAGGTGTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTCAAAGAAGACTATGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTGTTGGCTGAGTCTTTTGAATACATAGCACGTGCTGAGCCTGAATCTCTACATGCTGGCTTATTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGCGTACTAAGGGAGTGGTTTCTTCTGGTATGCCAAGCAATATTCAACCCACAAAATGCTCTTTTTGTGGCGTGCCCAAATGATCGAAGGAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTTGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAGCTATATTGCTTTAGAGGATATCAGGAACGCAGACCCTTGTCTGCATACTAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGAATTAGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGGGGGAAAAACGTTGTAGTTGATAGTAAGAACAGGGATAAGTATGTTGAACTTCTTATACAGGATCGCTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAAGGTTTTGCTGATATTCTTTCAAACTCCAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGACACCATTTCTGTTGAGGATTGGAAAGCGCATACTGAGTATAATGGTTATAGAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATTGTTGGGAGAATGACAGCCGATCAAAGGAAGGTTCTTCTATTCTTTTGGACATCGGTAAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCACGGCTCTACATATACAGATCCATTGAACCTGGTGATCGCTTGCCTTCATCTCATACATGTTTTTTCCGGTTGTGTTTCCCGGCTTATTCATCTATGGCTGTCATGAAAGAACGTCTTGAACTCATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA 2598 0.4496 MSMIETPAVHHLSGGPTDHHRHSSKRKLDEEDDGDFSDLVCVRMRKEEAVNSWSGSSGAAGSGCSAALQKQRSHIQFFVRMMSAGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGEAVPDSLKTIKGLITNYLSMTPRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAGNKECADSCVRHFLSACRNTLSKALHGQCACVVLEFCKLLRRVGCNDPLYLYCRSTFGSLLETAGVSYAGSDNAKGLVLIKDIFPFVFELANCLLMDLESSMQSPTAEGPLSNDIVDFTAFLLPLRTGIKEQQAVNGSMAEDKNNKDLLHAKEIEYLHCLYIQLLNKIDQCLQKIDQSLVGQEMMEGDDLYTAWSHYLSILKELYQISKLYDGAEDKLWSVLRLHKSVLCLLIVRYAKRTDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGSYIALEDIRNADPCLHTSCKQILDMDADFIDSDALGLTFVREVEELGQRKVVELCPGGKNVVVDSKNRDKYVELLIQDRFVTSISEQVSHFAKGFADILSNSKLQQYFFQSLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYRETDIQISWFWEIVGRMTADQRKVLLFFWTSVKYLPVEGFRGLASRLYIYRSIEPGDRLPSSHTCFFRLCFPAYSSMAVMKERLELITQEHIGCSFGTW* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0875 865 ProSiteProfiles Ubiquitin domain profile. 75 151 IPR000626 GO:0005515
Pvu3g0875 865 Gene3D Hect, E3 ligase catalytic domain 748 864 - -
Pvu3g0875 865 Gene3D Hect, E3 ligase catalytic domains 505 730 - -
Pvu3g0875 865 MobiDBLite consensus disorder prediction 14 32 - -
Pvu3g0875 865 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 63 863 - -
Pvu3g0875 865 PRINTS Ubiquitin signature 86 106 IPR019956 -
Pvu3g0875 865 PRINTS Ubiquitin signature 107 127 IPR019956 -
Pvu3g0875 865 PRINTS Ubiquitin signature 128 149 IPR019956 -
Pvu3g0875 865 SUPERFAMILY Ubiquitin-like 75 162 IPR029071 -
Pvu3g0875 865 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 63 863 - -
Pvu3g0875 865 SMART ubq_7 75 147 IPR000626 GO:0005515
Pvu3g0875 865 SMART hect_3 523 863 IPR000569 GO:0004842
Pvu3g0875 865 ProSiteProfiles HECT domain profile. 525 865 IPR000569 GO:0004842
Pvu3g0875 865 Pfam Ubiquitin family 78 149 IPR000626 GO:0005515
Pvu3g0875 865 CDD HECTc 504 863 IPR000569 GO:0004842
Pvu3g0875 865 SUPERFAMILY Hect, E3 ligase catalytic domain 500 851 IPR035983 GO:0004842
Pvu3g0875 865 Pfam HECT-domain (ubiquitin-transferase) 554 857 IPR000569 GO:0004842
Pvu3g0875 865 MobiDBLite consensus disorder prediction 1 32 - -
Pvu3g0875 865 Gene3D Hect, E3 ligase catalytic domain 625 707 - -
Pvu3g0875 865 Gene3D - 68 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0875 Pvu-Chr3 14126169 14132678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0875 75 149 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 4.37e-12 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0875 3 14126169 14132678 Pvu6g1488 6 25688688 25693251 PCT