Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0858 ATGAAGCTCGACAGCTCCAACGGCCAGCCGCCTCTTGCCCCCCACCTTCCGCCGCCGCAGGATGCCGACACCGATGCCGACACCGAGGAGATATTCGTGCCGCCGCTCAACTTCGCCATGGTCGACAACGGCATTTTCCGGTCTGGCTTTCCCGATTCTGCTAACTTTGGATTCCTGAAATCGCTCCGTCTCCGTTCCGTAATATGTTTGTGTCCTGAACCGTATCCAGAAACGACGTCGGAATTTTTGAAGGACAACGGAATAAGGCTTTATCAGTTCGGGATCGATGGCTGTAAGCACCGCACTGGTTGCCTTGTGGGATGCATAAGAAGATTGCAGAGGTGGTGTCTATCATCTGTTTTTGACGAGTACCAAAGATTTGCAGGTGCCAAAGCTAGGGTGTCAGACCAGAGGTTCATCGAATTATTTGACATATCCTATTTGAAGCAACAACAACTGCCATTTTCATGCTCAATGAAATAG 483 0.5031 MKLDSSNGQPPLAPHLPPPQDADTDADTEEIFVPPLNFAMVDNGIFRSGFPDSANFGFLKSLRLRSVICLCPEPYPETTSEFLKDNGIRLYQFGIDGCKHRTGCLVGCIRRLQRWCLSSVFDEYQRFAGAKARVSDQRFIELFDISYLKQQQLPFSCSMK* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0858 160 Gene3D Protein tyrosine phosphatase superfamily 31 98 IPR029021 -
Pvu3g0858 160 Gene3D Protein tyrosine phosphatase superfamily 99 147 IPR029021 -
Pvu3g0858 160 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 32 145 IPR029021 -
Pvu3g0858 160 MobiDBLite consensus disorder prediction 1 26 - -
Pvu3g0858 160 PANTHER TYROSINE-PROTEIN PHOSPHATASE 20 99 - -
Pvu3g0858 160 PANTHER TYROSINE-PROTEIN PHOSPHATASE 99 159 - -
Pvu3g0858 160 PRINTS Plant and fungal dual specificity phosphatase signature 32 49 IPR020428 GO:0016791
Pvu3g0858 160 PRINTS Plant and fungal dual specificity phosphatase signature 69 82 IPR020428 GO:0016791
Pvu3g0858 160 PRINTS Plant and fungal dual specificity phosphatase signature 88 102 IPR020428 GO:0016791
Pvu3g0858 160 PANTHER - 20 99 - -
Pvu3g0858 160 PANTHER - 99 159 - -
Pvu3g0858 160 Pfam Tyrosine phosphatase family 33 97 IPR004861 -
Pvu3g0858 160 Pfam Tyrosine phosphatase family 99 153 IPR004861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0858 Pvu-Chr3 13319373 13322517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0858 1 160 Protein tyrosine phosphatase (PTP) family AT4G03960 52.062 6.19e-66 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0858 K18045 - gmx:100785520 254.988