Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0857 ATGGGGAAATCAGGGGGTAGAAAAAAGAAGGGTGGTTCGAACCCAAACCAAGGTGTGGTTGATAATTCGGGCTCAGGTGTGGGTGTCCCAACGGCTAACGGTGGGTCGGAGTTGTTGGATTCGTCGATATTTTTGAAGAAGGCGAATGAGATGAAAGAGGAAGGGAATAGGAGGTTCCAAAATAAGGACTACGCGGGTGCTCTTGAACAGTACGAGAGTGCTCTTCGTTTAACCCCCAAAACGCACCCTGAAAGAGCCGTTTTCCACAGCAACAGGGCGGCGTGTTTGCTGCAGATGAAGCCCATAGATAATGAAGCTGTGATTGCTGAGTGCACCATGGCGCTTCAGGTCCAGCCCCGCTTTGTCCGGGCCCTTCTTCGCCGGGCCCGTGCCTTCGAGGCTGTTGGAAAGTATGAAATGGCTGTGCAGGATGTGCAGTTCTTGTTGGGTGCTGATCCTAGTAACCGTGATGCTTTGGAGATCGCCCAGAGATTGAGGACTGCGTTGGGGCCGCGTCAGGAAGCGCAGCAGGACCTCCAAAGTCGACCCTCTCCGGCTGCCCTTGGCGCTTCCGCCGTCCGTGGCGCCCCTATTGCTGGATTGGGGCCATGTTTGCCAGCCCGTCCTGTGGCGAAGAAGGGAGCCAATTCAGCAGTTGGATCTGTTGTGTTACCTAACAATAACAAGCTAGACAGCAAGGCGCAACCGGCTTTGCCTACTGAAAATGGTTCTGATAGCAAGTCCCACATGCCAAAACTGGTGTTGAAGCCTTCGAATGGTTCTCCAAAGCCACCTAACTCTGGAAAGGATGACCACAAGGCCCAGTCATCGGCCATTCATGGGCAGCGTTCTGAGGCTGCAATTCTGTGGAGACCGTTGAAGCTTGTTTATGATCATGACATTAGGCTCTCGCAGATGCCAATCAATTGCAACTTTAGAGTACTGAGGGATGTAGTGAGCAAAAGATTTCCTTCGTCAAGTTCTGTTCTGATCAAATATAAGGATTGCGATGGTGATCTGGTTACTATAACCTCTACTGATGAACTCAGACTGGCAGAGTCTAGTGTTGATAACCATCTCCTCAATGAACTTGGAGAAGTTAAAAGTGATTCTGTATCAATGCTGAGACTGCATATTGTTGAAGTTAGTCCAGAGCAGGAGCCACCTTTATTGGAAGAAGAGGTGGAAAAACCAGTTGAGAATGAAGGGGTCAAGGGAGATGAGAGTGGATCTCATTCTTCGCTCGAGGAATCCGTCTCTGAAGTTCCTGATAGTGAGGTTGATAAGATAGTGAAGGATGCCCCAAAGGAAAAGCCAGGAGCCACTGGAGATACTGAAAGCAAAGAAGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAACTTTTCCGCTCACATGTTGGTATTGATCCTGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCTGAGGCACTCGAGGAGACAGTAACTAGCGAGGAGGCCCAGGATCTATTTGACAAGGCTGCTTCAAAGTTTCAGGAGGTTGCTGCTTTAGCTTTCTTCAACTGGGGTAATGTTCACATGTGTGCAGCTAGGAAGCGGATCCCTCTGGATGAGTCAGCTGGGAAAGAGGTAGTGGCAGAGCAGCTTCAAGTGGCTTATGAATGGGTCAAGGAAAAGTATTCTTTGGCAAGAGAGAAGTACGAGGAAGCACTCTCGATCAAATCAGACTTTTACGAGGGACTGTTGGCTCTGGGGCAGCAGCAATTTGAAATGGCTAAACTTCATTGGTCTTTTGCACTTGCTAAGAAGATAGATCTATCTGGTTGGGATTCTAAGGAGACACTTCAACTTTTTGACAGCGCAGAGGAGAAGATGAAAGCAGCAACAGATATGTGGGAGAAACTAGAGGAGCAGAGAGCAAAAGAGCTAAAGGACCCAAATGCAACCAAGAAAGATGAATTATTGAGAAGAAGAAAGAAACAAGGAGGTGCTACTGAAGGTGAGTCCTCTACCGTTGGAGGTCAGGGTGATATATCTGCAGAAGAAGCTGCTGAGCAAGCAGCTGTCATGAGATCTCAAATTCACCTCTTCTGGGGTAATATGCTATTTGAAAGATCCCAAGTCGAATTCAAATTGGGAATGAGTGGATGGAAGAAAAACCTGGATGATGCAACTGAACGCTTTAAGCTTGCAGGAGCTTCTGAGGCAGATATTTCAATGGTTCTAAAGAATCATTCCTCAAATGGAGATACTAAAGATGGAGATGATAAAAAGGTTGAGAACATACGGCACAATAAGACCATTAAACCAGAGATCAATAAGGCTAATCAAGTATGA 2331 0.4736 MGKSGGRKKKGGSNPNQGVVDNSGSGVGVPTANGGSELLDSSIFLKKANEMKEEGNRRFQNKDYAGALEQYESALRLTPKTHPERAVFHSNRAACLLQMKPIDNEAVIAECTMALQVQPRFVRALLRRARAFEAVGKYEMAVQDVQFLLGADPSNRDALEIAQRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVAKKGANSAVGSVVLPNNNKLDSKAQPALPTENGSDSKSHMPKLVLKPSNGSPKPPNSGKDDHKAQSSAIHGQRSEAAILWRPLKLVYDHDIRLSQMPINCNFRVLRDVVSKRFPSSSSVLIKYKDCDGDLVTITSTDELRLAESSVDNHLLNELGEVKSDSVSMLRLHIVEVSPEQEPPLLEEEVEKPVENEGVKGDESGSHSSLEESVSEVPDSEVDKIVKDAPKEKPGATGDTESKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKEVVAEQLQVAYEWVKEKYSLAREKYEEALSIKSDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSKETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKDELLRRRKKQGGATEGESSTVGGQGDISAEEAAEQAAVMRSQIHLFWGNMLFERSQVEFKLGMSGWKKNLDDATERFKLAGASEADISMVLKNHSSNGDTKDGDDKKVENIRHNKTIKPEINKANQV* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0857 776 Coils Coil 616 636 - -
Pvu3g0857 776 PANTHER PROTEIN CLMP1 1 765 IPR044517 -
Pvu3g0857 776 SMART tpr_5 86 121 IPR019734 GO:0005515
Pvu3g0857 776 SMART tpr_5 542 575 IPR019734 GO:0005515
Pvu3g0857 776 SMART tpr_5 48 81 IPR019734 GO:0005515
Pvu3g0857 776 SMART tpr_5 122 155 IPR019734 GO:0005515
Pvu3g0857 776 SUPERFAMILY TPR-like 45 179 IPR011990 GO:0005515
Pvu3g0857 776 ProSiteProfiles TPR repeat profile. 48 81 IPR019734 GO:0005515
Pvu3g0857 776 MobiDBLite consensus disorder prediction 746 768 - -
Pvu3g0857 776 Pfam PB1 domain 290 381 IPR000270 GO:0005515
Pvu3g0857 776 Gene3D Tetratricopeptide repeat domain 44 169 IPR011990 GO:0005515
Pvu3g0857 776 ProSiteProfiles PB1 domain profile. 290 382 IPR000270 GO:0005515
Pvu3g0857 776 Gene3D - 292 363 - -
Pvu3g0857 776 MobiDBLite consensus disorder prediction 225 280 - -
Pvu3g0857 776 MobiDBLite consensus disorder prediction 390 414 - -
Pvu3g0857 776 MobiDBLite consensus disorder prediction 386 447 - -
Pvu3g0857 776 MobiDBLite consensus disorder prediction 636 662 - -
Pvu3g0857 776 CDD PB1 293 364 - -
Pvu3g0857 776 MobiDBLite consensus disorder prediction 636 676 - -
Pvu3g0857 776 MobiDBLite consensus disorder prediction 15 34 - -
Pvu3g0857 776 MobiDBLite consensus disorder prediction 225 247 - -
Pvu3g0857 776 MobiDBLite consensus disorder prediction 742 776 - -
Pvu3g0857 776 SUPERFAMILY CAD & PB1 domains 290 359 - -
Pvu3g0857 776 MobiDBLite consensus disorder prediction 422 447 - -
Pvu3g0857 776 MobiDBLite consensus disorder prediction 1 34 - -
Pvu3g0857 776 PANTHER - 1 765 - -
Pvu3g0857 776 SMART PB1_new 290 382 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0857 Pvu-Chr3 13315646 13318466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0857 45 169 Calmodulin-binding Proteins AT3G25230 30.147 3.96e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0857 - - var:108342436 1379.39