Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0855 ATGAGTCAACTCGGTCTCATTTTACAGGAATCGCTCCGCACAGAGAGAGAAGCAAGAACCATCCTGGGTCTGTTAACGGACCAAATGGACGTCGTCGATGGAGCCCAACGGAGGAGACGCACGCTCAAAGAACGCCTCAGATTCTCCGGAATCGGCTGCTGCGGGGCCACCTGGGTTTTCCGACAAACCGTAAGGGACGAAGGAGGAACACCACCACCACCGCCACCACCACAACAGCAAACAAACTCGGGTCAAGATCCGAACCCGAACAGACCCGAATGCATGGGTCCGAGGGGGTCGGGGTCGGGCATGAATCTAGCGGCGGCGCTGGCTGCGGAGAGGCAATTGCGGGAATCTGAAGAGGGAAGGGTGTCGTTGATGCGGCTATTGGAGGAGACGGAGCGTGGTGGAGATGCGGCTGTGAGTAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGCGCGGCATTTATCCCGTGTGGGCACACTTTCTGTAGGGTGTGTTCGAAAGAAATGTGGTTGAAGAGAGGTACTTGTCCCCTTTGTAACCGTTCCGTTCTCGACATTCTCCACATCTTCTGA 588 0.5612 MSQLGLILQESLRTEREARTILGLLTDQMDVVDGAQRRRRTLKERLRFSGIGCCGATWVFRQTVRDEGGTPPPPPPPQQQTNSGQDPNPNRPECMGPRGSGSGMNLAAALAAERQLRESEEGRVSLMRLLEETERGGDAAVSNDSVCCVCMGRKKGAAFIPCGHTFCRVCSKEMWLKRGTCPLCNRSVLDILHIF* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0855 195 SMART ring_2 147 184 IPR001841 -
Pvu3g0855 195 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Pvu3g0855 195 CDD RING-HC 147 184 - -
Pvu3g0855 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 192 IPR013083 -
Pvu3g0855 195 Pfam Zinc finger, C3HC4 type (RING finger) 144 189 - -
Pvu3g0855 195 PANTHER OS01G0917900 PROTEIN 17 195 - -
Pvu3g0855 195 SUPERFAMILY RING/U-box 142 191 - -
Pvu3g0855 195 MobiDBLite consensus disorder prediction 64 100 - -
Pvu3g0855 195 MobiDBLite consensus disorder prediction 68 82 - -
Pvu3g0855 195 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0855 Pvu-Chr3 13250162 13251113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0855 21 195 C3H Transcription Factor Family AT4G22250 52.020 2.56e-52 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0855 - - gmx:100792613 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0855 3 13250162 13251113 Pvu6g1510 6 25872451 25873768 PCT