Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0851 ATGGAGGGTGGTTCTAACGAGGCCTCCAGTGTGATGGGTTTTGGAGAGAATACAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGGTGGTCATCATCCATTAAATCCTAATCTTAATAATCCTAATCGTAATCCTAATGTAAACACAAACACAAATACTCTCTTCCTTCCCATGCCTACTACTACTAATAATCACCACCCAAACCGCAATAGCATCCACGACAATAACCACAACACCAACACCTCTGAGTTAGGGTATTTCATGGAGATCCACAGCCGCAACACGAACAACAACAACGATGGAAGTTCCTCTTCTTCTTCTTCTTCTGCTGTGAAGGCCAAGATCATGGCCCATCCTCATTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCGCCACCTGAAGTGGTGGCAAGGCTAGAAGAAGCATGTGCATCTGCTGCAGTGACTATGGCAGGTGGAACGGCTAGAATCGGTGAGGATCCGGCGCTAGACCAGTTCATGGAGGCTTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCACCAAACCCTTCAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAATCTCTTACCATTTCTTCTTCCGACACTGGTTGTAATGAAGGTGGTGATAGGAATGGATCATCTGAAGATATTGATGTGCACAACAACATAATAGATCCACAGGCAGAGGACCAAGAACTGAAAGGTCAACTCTTGCGTAAGTACCGTGGATACCTAGGTAGTTTGAAGCAGGAATTCACGAAGAAGAGAAAAAAGGGCAAGTTGCCCAAAGAAGCAAGGCAACAATTACTTGATTGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTGGCACTTGCAGAGTCAACAGGGCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAGCCTTCGGAGGACATGCAATTTGTGGTGGTTGATCCAAGCCATCCACACTACTACATGGAAAATGTTGTGGGCAATCCCTTTCCCGATCTCTCTCACACAATGCTCTAA 1110 0.4559 MEGGSNEASSVMGFGENTSSSGVCPMMMMPLVTSHHGGHHPLNPNLNNPNRNPNVNTNTNTLFLPMPTTTNNHHPNRNSIHDNNHNTNTSELGYFMEIHSRNTNNNNDGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGTARIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFLQRIECQFKSLTISSSDTGCNEGGDRNGSSEDIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVVGNPFPDLSHTML* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0851 369 ProSitePatterns 'Homeobox' domain signature. 310 333 IPR017970 GO:0000981|GO:0006355
Pvu3g0851 369 PANTHER - 3 359 - -
Pvu3g0851 369 SMART KNOX1_2 117 161 IPR005540 GO:0003677|GO:0005634
Pvu3g0851 369 SMART HOX_1 274 339 IPR001356 GO:0003677
Pvu3g0851 369 Gene3D - 277 339 - -
Pvu3g0851 369 CDD homeodomain 284 336 IPR001356 GO:0003677
Pvu3g0851 369 Pfam KNOX1 domain 118 157 IPR005540 GO:0003677|GO:0005634
Pvu3g0851 369 Pfam ELK domain 252 272 IPR005539 GO:0003677
Pvu3g0851 369 SMART KNOX2_2 166 217 IPR005541 GO:0003677|GO:0005634
Pvu3g0851 369 ProSiteProfiles ELK domain profile. 252 272 IPR005539 GO:0003677
Pvu3g0851 369 MobiDBLite consensus disorder prediction 1 21 - -
Pvu3g0851 369 SMART ELK_2 252 273 IPR005539 GO:0003677
Pvu3g0851 369 SUPERFAMILY Homeodomain-like 274 350 IPR009057 -
Pvu3g0851 369 Pfam KNOX2 domain 170 216 IPR005541 GO:0003677|GO:0005634
Pvu3g0851 369 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 359 - -
Pvu3g0851 369 Pfam Homeobox KN domain 292 331 IPR008422 GO:0003677|GO:0006355
Pvu3g0851 369 ProSiteProfiles 'Homeobox' domain profile. 272 335 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0851 Pvu-Chr3 13169130 13174423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0851 119 369 Homeobox Transcription Factor Family AT1G62360 78.626 1.64e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pvu3g0851 KNOX2 5.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0851 - - gmx:100127401 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0851 3 13169130 13174423 Pvu6g1518 6 25965619 25972338 PCT