Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0847 ATGAAGGTTGTTGTCCCAAATAAAGAACAGCCAAAAACTCCGCAAACTGAGGATAAGTCGAAGTTGTCCAGATGCTCTGAAGTTTACGGAACTCCGAAGAGAAAAGCTGAAAAAATTCCTGAGCATGGTCATAAGAAGAATTGTGCAGTAAGGGTGACTGAAAAGAAACGAGAGGTTCGAGAAATCAATAAGTTTGATAATATAAAACCAAAGTTAGAAGCGAGAGAAGATTTGTGTTCACTGAAGACAACAAAACTACCATGCTGGAGAAGAGATGAGAAACAAAAGCTTACTGTCTCAAACAAGAAAAGGAAATATAAAGATGATCTCTTGAATGATGATGATTTAGAAGATGAAGAAATGCTTATTCTGTTAAGGGCAAAGACCAGTAGCAGATCTAGAAGAATGAATAATGTGAAGAATGTTGAACAAAAGCCCCGAAATTGTCATCAATGCATGAAAAAGGGCAGAACACTTTTTGTGCCTTGTACTAAATGCCCGAAGATGTACTGTATGCAGTGTGTTGATAAATGGTACCCTGATATGAAAATAGAAGAAATTGCTGTAAGTTGTCCGTTTTGTCGGAAAAACTGCAATTGCAATGTTTGCTTGAGCTCCAGAGGAATGATTAAGACATCTAACAGGGACATAACTGATTATGAAAAGGCTCAGAATCTGCATTATATGATTAACTTACTCCTACCATTTTTGAAACAAATTTGTCATGAACAAAATCAAGAGGAGCAGATTGAAGCTAAAATACTAGGAAAGCATTCTTTTGAGAAGGAAATACCTCAAAGTCTTTGTGGCAACGATGAACGTGTCTATTGTGATCACTGTGCTACTTCAATTATTGACCTTCATAGAAGCTGCCCCAGTTGTTCCTATGAACTCTGCCTTAGTTGTTGCCAAGAAATACGTGATGGTAGCATTACACCCCGGGTCGAGCAGAAGTTCTTATATGTGAATAGGGGCTATGATTATATGCATGGTGGAGACCCTCTACCTGTGTCTAATGATTTCGGAACATCAGAATGTCATACTAAGCTATCTAATGTGTGGAATGCTAAGAGTGATGGAAGCATCCGATGTGCACCAAAGGAGTTCGGCGGTTGTGGTAGTGCTGCATTGGAGCTGAGACGTGTCCTACCAAGTGGGTGGATATCTGAATTGGAAATCAGAACTCGCAGTATGCTGAAAATTTGGGAAAATGTTAACACTACTCTTCAGCAAAAGAAAGCAGTATCAAGCTGCACCTCTTTGAGAAAGGAAGCTATTAAAGTAGACATAAATGATGATAATATGTACTGTTCAGAGTCAAGTAACATTCAAAAGGGAGGATTGTTACTTTTCCAAAAGCATTGGGCTAATGGCGAACCAGTTATAGTTCGTGATGCCCTTAAACTGGGCACCGGTCTGAGCTGGAAGCCGATGGTAATGTGGCGAGCATTATGCGAAAATAGGATTTCAGAGGTCGGTTCAAAAATGTCAGAAGTGAAAGCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATCGATACTCACACATTTTTTAAAGGTTATATAGAGGGAAGAACATACAGAAATCTCTGGCCAGAGATGCTCAAGCTGAAAGACTGGCCCCCCTCTGATAAATTTGAAGATCTTTTGCCCCGCCATTGTGATGAGTTTATTCGCTCCTTGCCATTCCAAGAGTACAGCGATCCTCGGAGCGGAATTCTTAATCTTGCTGCGAAGTTGCCAGCACATGTCCTAAAACCTGACATGGGTCCGAAAACATATATTGCCTATGGGATTAAAGAAGAGCTTGGTAGAGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTCAATATTTTGACCCATACAGCAGAGGTGATATTAACTGATGAGCAGCACTTAATTATTTCAAAGTTGAAAGAAGCACACAAGGTACAAGATGAGAGAGAGCAGTGTGCTCAAGAAACAGTTTCCGACAGCCTGAATGGCCGACCTTTCAAACAAAACAAAGTGCGGACAGAAAATAAGGTAGTTTTAGAATCCAAAGACATAGAGAAGCGCCCTATTGAAATTAATGGAAGGATCTTTCCAAATGATGTACATGAAGGGTTCACGTCTGCTACAGAGAATGAATCAATAGAAACAGGCAGTGCTCTATGGGATATCTTTCGGAGAGAAGATTCTGAGAAGTTAGAAACATATCTTAGGAAGCACTCAAGAGAATTTAGACATACTTATTGTTCTCCCGTTGAAGAGGTTGCACATCCAATTCATGACCAATGTTTTTATTTGACATCGGAGCACAAGAAGAAGCTGAAGGAGGAGTTCGACGTAGAACCGTGGACTTTTGAGCAAAAACTAGGGGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCGGTAGACTTTGTGTCTCCAGAAAATATCCATGAGTGTCTGCGTTTAACTAATGAGTTCCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAGCTTGAGATAAAGAAGATGATAGTTTATGCCATTGATGAAGCTGTCACAGACTTAAAAGCTTTGTTGAACTTTTCTTGA 2616 0.4029 MKVVVPNKEQPKTPQTEDKSKLSRCSEVYGTPKRKAEKIPEHGHKKNCAVRVTEKKREVREINKFDNIKPKLEAREDLCSLKTTKLPCWRRDEKQKLTVSNKKRKYKDDLLNDDDLEDEEMLILLRAKTSSRSRRMNNVKNVEQKPRNCHQCMKKGRTLFVPCTKCPKMYCMQCVDKWYPDMKIEEIAVSCPFCRKNCNCNVCLSSRGMIKTSNRDITDYEKAQNLHYMINLLLPFLKQICHEQNQEEQIEAKILGKHSFEKEIPQSLCGNDERVYCDHCATSIIDLHRSCPSCSYELCLSCCQEIRDGSITPRVEQKFLYVNRGYDYMHGGDPLPVSNDFGTSECHTKLSNVWNAKSDGSIRCAPKEFGGCGSAALELRRVLPSGWISELEIRTRSMLKIWENVNTTLQQKKAVSSCTSLRKEAIKVDINDDNMYCSESSNIQKGGLLLFQKHWANGEPVIVRDALKLGTGLSWKPMVMWRALCENRISEVGSKMSEVKAIDCLANCEVEIDTHTFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYSDPRSGILNLAAKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVILTDEQHLIISKLKEAHKVQDEREQCAQETVSDSLNGRPFKQNKVRTENKVVLESKDIEKRPIEINGRIFPNDVHEGFTSATENESIETGSALWDIFRREDSEKLETYLRKHSREFRHTYCSPVEEVAHPIHDQCFYLTSEHKKKLKEEFDVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAIDEAVTDLKALLNFS* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0847 871 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 145 214 IPR018866 -
Pvu3g0847 871 Gene3D Cupin 430 843 - -
Pvu3g0847 871 SUPERFAMILY Clavaminate synthase-like 450 865 - -
Pvu3g0847 871 Pfam JmjC domain, hydroxylase 714 817 IPR003347 -
Pvu3g0847 871 SMART cupin_9 550 834 IPR003347 -
Pvu3g0847 871 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 33 869 - -
Pvu3g0847 871 ProSiteProfiles JmjC domain profile. 569 834 IPR003347 -
Pvu3g0847 871 CDD cupin_RmlC-like 758 818 - -
Pvu3g0847 871 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 33 869 IPR045109 GO:0032454|GO:0033169
Pvu3g0847 871 MobiDBLite consensus disorder prediction 1 23 - -
Pvu3g0847 871 ProSiteProfiles Zinc finger RING-type profile. 149 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0847 Pvu-Chr3 13096120 13101118 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pvu3g0847 JmjC 6.8e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0847 K15601 K21989 gmx:100797860 1336.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0847 3 13096120 13101118 Pvu3g0847 3 13096120 13101118 ECH
Pvu3g0847 3 13096120 13101118 Pvu6g1525 6 26023442 26027457 PCT