Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0843 ATGGCCACGTCAAGACCACCCCTCTTGCTTTCATGCTTCATGCTACTCCTTGCTTCAACCTTTGTTATTGCTCATTCAACAGAGAACAACTACTACAAGAACACTTCCCAACCTCTTCTAAAGCATATCCCTAAGAAACCATTGCTCAATGTGATAGACTCTTGCTGGAGGGCCAAACAAAATTGGAGCTCAAGTCGCCAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGAGGCCACAGGAGGCAAACATGGTGCAATATACCAAGTCTCGGATCCCTCTGATGACCCAGTAAACCCAAAACCAGGCACACTCCGTTATGGTGCAATCCAAAATGAGCCACTCTGGATCATTTTTGACAAAGACATGGTCATTACATTAAAAAATGAGCTTTTTATGAATAGCTACAAGACCATTGATGGAAGAGGAGCAAAAGTGGAGATTGCTGATGGGCCTTGCATTACATTACAAAGTGTTAGACATATTATTATACATGGCATTAGCATCCATGATTGCAAACCAGCCAAGCCTGGCCTTGTTAGGAGCACTCCTGATCATGTTGGCCATCGTCTAGGCTCAGATGGAGATGCCATTAGCATATTTCATTCCACCAATATTTGGATTGATCATTGTTTTTTGGCTTGTTCCACCGATGGCTTAATCGATGTTATTCGTGCCTCAACTGCAATTACCATCTCTAACAATTACTTTACTCAGCATGACAAAGTTATGCTGCTAGGACATAGTGACCAGTTCACAAAGGATAAAATAATGAAAGTGACTATAGCCTTCAACCAGTTTGCCAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTGAACAACAAATATGATGAGTGGAAAATGTATGCTATAGGCGGTAGTGCTAACCCAACCATTTTAAGTGAAGGGAATGTTTATGTAGCACCAAATGACCCAAATGCAAAACAGGTTACCAAGAGGGAAGGGAAGGAAAACTGGAAAAGTTGGAAATGGAGGTCTTCCAAGGACTTGTTTTTAAATGATGCTTATTTTGTACCGTCTGGATTTGGAAGCTGTGCTCCAAATTACTCACCAACTCAATCTTTTGCTGCTGCTCCAGCATACATGGTGCCTGCAATAACTCTAAATGCAGGCCCCACAGATTGTACTGTTGGGAGAGCCTGCTAG 1191 0.4274 MATSRPPLLLSCFMLLLASTFVIAHSTENNYYKNTSQPLLKHIPKKPLLNVIDSCWRAKQNWSSSRQALADCAIGFGKEATGGKHGAIYQVSDPSDDPVNPKPGTLRYGAIQNEPLWIIFDKDMVITLKNELFMNSYKTIDGRGAKVEIADGPCITLQSVRHIIIHGISIHDCKPAKPGLVRSTPDHVGHRLGSDGDAISIFHSTNIWIDHCFLACSTDGLIDVIRASTAITISNNYFTQHDKVMLLGHSDQFTKDKIMKVTIAFNQFASGLTERMPRVRFGYAHVVNNKYDEWKMYAIGGSANPTILSEGNVYVAPNDPNAKQVTKREGKENWKSWKWRSSKDLFLNDAYFVPSGFGSCAPNYSPTQSFAAAPAYMVPAITLNAGPTDCTVGRAC* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0843 396 PANTHER PECTATE LYASE 1 395 - -
Pvu3g0843 396 Gene3D - 49 388 IPR012334 -
Pvu3g0843 396 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Pvu3g0843 396 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Pvu3g0843 396 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Pvu3g0843 396 PRINTS Pollen allergen Amb family signature 195 216 IPR018082 -
Pvu3g0843 396 PRINTS Pollen allergen Amb family signature 275 294 IPR018082 -
Pvu3g0843 396 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Pvu3g0843 396 PRINTS Pollen allergen Amb family signature 337 361 IPR018082 -
Pvu3g0843 396 PRINTS Pollen allergen Amb family signature 367 390 IPR018082 -
Pvu3g0843 396 Pfam Pectate lyase 134 314 IPR002022 -
Pvu3g0843 396 PANTHER PECTATE LYASE 18-RELATED 1 395 IPR045032 GO:0030570
Pvu3g0843 396 SMART amb_all 123 320 IPR002022 -
Pvu3g0843 396 SUPERFAMILY Pectin lyase-like 50 387 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0843 Pvu-Chr3 13035301 13037208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0843 8 396 Polysaccharide Lyase AT4G22080 61.381 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0843 K01728 - gmx:100807483 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0843 3 13035301 13037208 Pvu3g0843 3 13035301 13037208 ECH
Pvu3g0843 3 13035301 13037208 Pvu6g1535 6 26070018 26071839 PCT