Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0805 ATGATGCAGCCAGGACCCGGCATGGCCCAACAACCCAACCAACAATACCCACAACAGCAGCAACAGCAACAGCAACCCTACATGATGATGCCCCCTCAGCCGCAGCCCCCTCAGATGTGGGCTCCATCGGCCCAGCCTCCACCGCAATCGGTGGCTCCTCCGCAGCCCACCAGCGCCGATGAGGTCCGTACCCTCTGGATCGGTGATTTGCAGTACTGGATGGACGAGAATTACCTCTATACGTGTTTCGCGCACACAGGCGAGGTGGCTTCCGTTAAAGTCATTCGGAACAAACAAACTAGTCAATCGGAGGGATATGGGTTTATTGAGTTTACCAGTCGTGCTGGTGCTGAGAGAATCCTTCAAACATACAACGGAACCATTATGCCAAACGGTGGTCAGAACTTCAGATTGAACTGGGCTTCTTTTAGTGCGGGTGATAGGCGTCATGACGACAGCCCAGATCACACCATATTTGTTGGAGACCTGGCTGCAGATGTTACAGATTATCTTCTGCAAGAGACATTTCGGGCACGGTATCCCTCGGTTAAGGGTGCCAAAGTTGTAATTGATAGGCTCACTGGTCGGACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGCGAATTGGACCTGCCTCTAATAAAAACCCTAGCACTCAGTCCCAGCCAAAAGCATCATATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACAACGATTTTTGTCGGCAATTTGGATCCTAATGTCACCGATGACCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGTTAGTTCACGTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCGGACAGGAGCTGTGCAGAAGAGGCTCTGCGGGTTTTAAACGGCACACTTTTGGGTGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAACAGGCCCAACCAGATGCAAATCAGTGGAATGGCAGCGGTGGTTACTATGGATATGCTGCTCAGGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAAGACCCCAATATGTATGGCAGTTATCCGGGCTATGCAAATTACCAACCTCCTCAGCAACAACAGCAAATAGGATATAGCTAA 1197 0.4904 MMQPGPGMAQQPNQQYPQQQQQQQQPYMMMPPQPQPPQMWAPSAQPPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERILQTYNGTIMPNGGQNFRLNWASFSAGDRRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDANQWNGSGGYYGYAAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQIGYS* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0805 398 CDD RRM2_SECp43_like 155 234 - -
Pvu3g0805 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 143 IPR000504 GO:0003723
Pvu3g0805 398 MobiDBLite consensus disorder prediction 230 261 - -
Pvu3g0805 398 MobiDBLite consensus disorder prediction 227 261 - -
Pvu3g0805 398 MobiDBLite consensus disorder prediction 1 28 - -
Pvu3g0805 398 SUPERFAMILY RNA-binding domain, RBD 26 144 IPR035979 GO:0003676
Pvu3g0805 398 Gene3D - 242 369 IPR012677 -
Pvu3g0805 398 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 395 - -
Pvu3g0805 398 CDD RRM3_NGR1_NAM8_like 262 333 - -
Pvu3g0805 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 335 IPR000504 GO:0003723
Pvu3g0805 398 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 18 395 - -
Pvu3g0805 398 SUPERFAMILY RNA-binding domain, RBD 140 243 IPR035979 GO:0003676
Pvu3g0805 398 MobiDBLite consensus disorder prediction 1 58 - -
Pvu3g0805 398 MobiDBLite consensus disorder prediction 29 54 - -
Pvu3g0805 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 235 IPR000504 GO:0003723
Pvu3g0805 398 SMART rrm1_1 157 231 IPR000504 GO:0003723
Pvu3g0805 398 SMART rrm1_1 64 139 IPR000504 GO:0003723
Pvu3g0805 398 SMART rrm1_1 264 331 IPR000504 GO:0003723
Pvu3g0805 398 CDD RRM1_SECp43_like 64 144 - -
Pvu3g0805 398 SUPERFAMILY RNA-binding domain, RBD 247 361 IPR035979 GO:0003676
Pvu3g0805 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 221 IPR000504 GO:0003723
Pvu3g0805 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 130 IPR000504 GO:0003723
Pvu3g0805 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 328 IPR000504 GO:0003723
Pvu3g0805 398 Gene3D - 147 241 IPR012677 -
Pvu3g0805 398 MobiDBLite consensus disorder prediction 384 398 - -
Pvu3g0805 398 MobiDBLite consensus disorder prediction 378 398 - -
Pvu3g0805 398 Gene3D - 6 146 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0805 Pvu-Chr3 12206002 12210412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0805 65 345 Eukaryotic Initiation Factors Gene Family AT4G34110 25.784 3.12e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0805 - - gmx:100796848 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0805 3 12206002 12210412 Pvu6g1565 6 26378890 26382969 PCT