Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0785 ATGGCGTTTTCTGCTTCAACACACAAATCTGCGGGACTTCTTCCAGGGGCAATCAATGATGATTTATACAAGGAGTTGTGGCATGCCTGTGCTGGTCCCCTTGTCACTCTCCCTCGTGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTTGAGGCATCGATGTATGAGGGATTGGAGCAGCAGATGCCTTCCTTCAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAATCCGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAATTAGATCAAAGTGAGGTGACCAGCCCTGATGATCCTCTGACAGAATCTCCAAGGGTCAAGATCCATTCATTTTGCAAGACACTTACTGCTTCTGATACCAGTACCCATGGGGGTTTCTCTGTTCTTCGAAGACATGCGGATGATTGTCTACCTCCATTGGATATGTCACAGCAACCACCATGGCAAGAACTGGTGGCAACTGATTTACATGGGAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAAGCGCCACTTACTTACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAGTTAGTGGCTGGTGATGCCTTTATATTCTTAAGGGATGAAAATGGAGAGCTGCGAGTTGGGGTTAGGAGGGTGATGAGACAGCAGAGCAATGTGCCTTCTTCTGTTATATCTAGTCACAGTATGCATTTAGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGTGTCAACAAATATCTGGAAGCTAAGAGTCATAAACTCTCTGTTGGGATGAGATTTAAAATGAGATTTGAAGGTGATGAAATTCCCGAAAGAAGGTTCAGTGGCACAATTGTGGGTGTTGGAGATAATAAATCATTGGTGTGGCCTGATTCCGAATGGCGATCATTAAAGGTGCAGTGGGATGAACCATTGTCAATTTTGCGCCCTGATAGAGTTTCTTCATGGGAATTGGAGCCACATGTCTCAACCACTCCTGCAAACCCACAGCCAACACAAAGAAACAAGAGGGCACGGCCTCTTATTCTAACTTCTACAATGCCTGATTCATCTTTGCAAGGCATGTGGAAATCTCCAGTTGAATCTACATCTTTCTCTTATTGTGATCCTCAACATGGACGTGGCCTCTATCCATCACCCAAGTTCAATCCTTCTGCAACTATTCTTGGTTTTAGTGGGAATGGCTTTGTGGGACCTCCTTCCAACAAATCAATATATTGGTCTAATAGGGTGCAAAATTTCTTGGAATCAATGTCAGATACAGTCCCTAAAGAAGCTGGAGAGAAGAGACAAGACACTGGAAATGGCTGCAGACTCTTTGGGATCCAGCTACTTGAGAATTCTAATGCAGAAGAATGTCTACAAACAGTCACTTTGTCTGGAAGGCTAGGTGATGATAGGTTTGTTCCATCTTTAGATGCTGAATCTGATCAGCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTGTCTCCCCAGGAATTGCAAAGCAGGCAAATAAGGAGCTGTACCAAGGTTCACATGCAAGGAATGGCCGTTGGGAGGGCTGTGGATTTAACCCGATTTCATGGATACCAAGATCTGCTCAAGAAATTGGAGGAGATGTTTGATATCAAGACTGAGCTGTGTGGGTCCATAAAAAAATGGCAGGTTGTCTACACTGACAACGAAGATGATACGATGATGGTTGGGGACGACCCATGGGATGAGTTTTGTAGTGTTGTGAGGAAAATTTTCATCTACACGGCAGAGGAGGTGAAGAAGCTTTCTCCGAAAATAGGACTTTCAATGAATGAAAATAGGACTTCGAATCCCGAGGAGCAGTCGTCTAACATGGGACCCAGTTGCTAG 1962 0.4419 MAFSASTHKSAGLLPGAINDDLYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMYEGLEQQMPSFNLPSKILCKVVNVHLRAESETDEVYAQITLLPELDQSEVTSPDDPLTESPRVKIHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPKRHLLTTGWSVFVSSKKLVAGDAFIFLRDENGELRVGVRRVMRQQSNVPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAKSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSLVWPDSEWRSLKVQWDEPLSILRPDRVSSWELEPHVSTTPANPQPTQRNKRARPLILTSTMPDSSLQGMWKSPVESTSFSYCDPQHGRGLYPSPKFNPSATILGFSGNGFVGPPSNKSIYWSNRVQNFLESMSDTVPKEAGEKRQDTGNGCRLFGIQLLENSNAEECLQTVTLSGRLGDDRFVPSLDAESDQPSVSCDAEKSCLSPQELQSRQIRSCTKVHMQGMAVGRAVDLTRFHGYQDLLKKLEEMFDIKTELCGSIKKWQVVYTDNEDDTMMVGDDPWDEFCSVVRKIFIYTAEEVKKLSPKIGLSMNENRTSNPEEQSSNMGPSC* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0785 653 SUPERFAMILY CAD & PB1 domains 541 615 - -
Pvu3g0785 653 Gene3D - 533 627 - -
Pvu3g0785 653 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Pvu3g0785 653 MobiDBLite consensus disorder prediction 632 653 - -
Pvu3g0785 653 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Pvu3g0785 653 ProSiteProfiles PB1 domain profile. 538 631 IPR000270 GO:0005515
Pvu3g0785 653 PANTHER AUXIN RESPONSE FACTOR 9 9 639 - -
Pvu3g0785 653 Gene3D - 124 229 IPR015300 -
Pvu3g0785 653 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 639 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu3g0785 653 Gene3D - 290 363 - -
Pvu3g0785 653 CDD B3_DNA 125 227 IPR003340 GO:0003677
Pvu3g0785 653 Pfam AUX/IAA family 536 628 IPR033389 -
Pvu3g0785 653 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pvu3g0785 653 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu3g0785 653 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0785 Pvu-Chr3 11738914 11747551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0785 5 635 B3 DNA Binding Superfamily AT1G59750 69.136 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu3g0785 AUX_IAA 4.5e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0785 K14486 - gmx:100815450 1154.04