Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0762 ATGGGCAAGAGAAAATCAGCGGCTAAGGCCCCTCCAAAGAAACGAATGGATAAACTTGACACTGTCTTTAGCTGTCCTTTCTGCAATCATGGGACCAGTGTTGAATGCAGCATTGATATGAAGAACATGATAGGGGAAGCTTCATGCAATATATGTCAAGAGAGCTTTAGCACCACCATCACAGCTTTATCTGAGCCAATAGACATATACACTGAATGGATTGATGAATGTGAGCTGGCGAACAACCAAGAAGATGATGGCGCTGAGTGA 270 0.437 MGKRKSAAKAPPKKRMDKLDTVFSCPFCNHGTSVECSIDMKNMIGEASCNICQESFSTTITALSEPIDIYTEWIDECELANNQEDDGAE* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0762 89 Gene3D - 16 81 IPR038567 -
Pvu3g0762 89 Coils Coil 74 89 - -
Pvu3g0762 89 PANTHER UNCHARACTERIZED 1 88 IPR007808 -
Pvu3g0762 89 SUPERFAMILY Zinc beta-ribbon 1 81 - -
Pvu3g0762 89 Pfam Transcription elongation factor Elf1 like 2 78 IPR007808 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0762 Pvu-Chr3 11316807 11318836 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu3g0762 Elf1 4.4e-31 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0762 K25829 - mnt:21394685 162.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0762 3 11316807 11318836 Pvu3g0762 3 11316807 11318836 ECH
Pvu6g1874 6 29015187 29017556 Pvu3g0762 3 11316807 11318836 ECH