Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0732 ATGGGTGCAGGGGACTACTACAAGATCCTCAAGGTGAACCGCAATGCCTCGGATGAAGAACTCAAGAGGGCATATAAGAGGTTGGCCATGAAGTGGCACCCAGACAAGAACCATCAGCACCACCTTGTTACTAAAGAAGAAGCTGAGGCCAAGTTCAAGCAGGTTTCGGAGGCTTATGATGTTCTCAGTGACCCCAAGAAGCGCCAGATCTATGATTTTTATGGCCAGTATCCCTTGAATTCTATGAAGGTGAAGGAGGAGAAGGGTGACGGGGTTGTTGAAAGAAAATTGGTGTGCACCCTTGAAGAACTTTACAAAGGTTACAAAAAGAAGTTGAAGATCTCAAGGACTGTTCATCATGGATTCGGTAAGTTGAAGACTGAGGAAGAGGTCTTGAAAATAGATATCAAACCTGGTTGGAAGAAAGGCACAAAAATAACATTTCCTGGGAAAGGCAACCAAGAAGCACAAGCTAGTGCTCCTGATGATCTAATCTTTGTTGTGGATGAGAAACCACATGCTTTATTCAAGAGGGATGGAAATGATTTGGTTGTCACACAAAAAATCTTACTTGTAGAGGCTCTAGTGGGAAAGACTCTCAACTTAACAACCTTGGATGGAAGAGAGCTCAGAATTCAAGTGACAGATGTTGTGAAACCAAAATTTGTGTTGGTGGTCCCAAATGAAGGAATGCCAATCTCAAAGGAACTTGGAAAGAAAGGAAACTTGAGAATCAAGTTTGATGTTATGTTCCCATCATGGCTCACCACACAACAGAAGTATGAGCTGAAAAGGATTTTGAGCAACACTGATGACTAA 819 0.4249 MGAGDYYKILKVNRNASDEELKRAYKRLAMKWHPDKNHQHHLVTKEEAEAKFKQVSEAYDVLSDPKKRQIYDFYGQYPLNSMKVKEEKGDGVVERKLVCTLEELYKGYKKKLKISRTVHHGFGKLKTEEEVLKIDIKPGWKKGTKITFPGKGNQEAQASAPDDLIFVVDEKPHALFKRDGNDLVVTQKILLVEALVGKTLNLTTLDGRELRIQVTDVVKPKFVLVVPNEGMPISKELGKKGNLRIKFDVMFPSWLTTQQKYELKRILSNTDD* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0732 272 Pfam DnaJ domain 5 72 IPR001623 -
Pvu3g0732 272 Gene3D - 173 253 - -
Pvu3g0732 272 CDD DnaJ_C 93 253 - -
Pvu3g0732 272 Gene3D - 92 171 - -
Pvu3g0732 272 CDD DnaJ 5 64 IPR001623 -
Pvu3g0732 272 PRINTS DnaJ domain signature 7 25 IPR001623 -
Pvu3g0732 272 PRINTS DnaJ domain signature 25 40 IPR001623 -
Pvu3g0732 272 PRINTS DnaJ domain signature 47 67 IPR001623 -
Pvu3g0732 272 PRINTS DnaJ domain signature 67 86 IPR001623 -
Pvu3g0732 272 SMART dnaj_3 4 67 IPR001623 -
Pvu3g0732 272 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 269 - -
Pvu3g0732 272 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
Pvu3g0732 272 SUPERFAMILY HSP40/DnaJ peptide-binding domain 176 260 IPR008971 GO:0006457|GO:0051082
Pvu3g0732 272 Gene3D DnaJ domain 2 91 IPR036869 -
Pvu3g0732 272 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 269 - -
Pvu3g0732 272 SUPERFAMILY Chaperone J-domain 4 79 IPR036869 -
Pvu3g0732 272 SUPERFAMILY HSP40/DnaJ peptide-binding domain 95 173 IPR008971 GO:0006457|GO:0051082
Pvu3g0732 272 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Pvu3g0732 272 Pfam DnaJ C terminal domain 94 252 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0732 Pvu-Chr3 10624563 10626888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0732 6 74 C2H2 Transcription Factor Family AT1G74250 39.130 1.85e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0732 K09510 - gmx:100786068 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0732 3 10624563 10626888 Pvu3g0732 3 10624563 10626888 ECH
Pvu2g0907 2 13897231 13901359 Pvu3g0732 3 10624563 10626888 PCT
Pvu3g0732 3 10624563 10626888 Pvu2g0708 2 8457556 8459645 PCT