Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0727 ATGCCTGGTGAGATGCTTAATGGGGGTTCAAGCATGACGCTTCTACTCCAAAAAGAAAGGCTTCCATCATCCCCTGACCTTATCCAAACCTCTTGGGTTCAAAACTCTGAACCTTCTTTCCAAGGCTCAAAATCCTTGGTTAATGTTGTGAATGTGAGGAATAGGCCCTTCTTCCGAGGGGTTGAGAAAGAAGAGAACGGTGATGATGAAGATTTTGATGTATTCCCCCATCAACCCGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAATTCCTTGAAAGTAACTTCGAGGTCGAAAACAAGCTTGAACCCGAAAGGAAAGTCCAACTTGCAAAGGAACTTGGCATGCAACCAAGACAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGATTCAAGACCAAACAGCTGGAAAAAGACTATGGCATGTTGAAAGCTGGATATGACATTCTCAGAAGGGACTATGACAACCTCGTTCAAGAAAATGACAAGTTGAAGGAAGAGGTTTATTCTCTGATGAAGGTGATTCCCAGAGAGAAGGAGGAACAGAATTTGGATGATACCAGCTGTGGTGCTGTCAACTCAGAGCATAAAGAGGAGAAGGATTTGATCATATATAGAGGTTCTGAAAATGGATCCAAAGTGGCACTTCCTGTTATGGTAGTAAGCAAACAGAGAGATGCTAATTCAGCTAAAAGTGATGTGCTTGATTCGGAGAGCCCACATCTCACTGATGGAAACCAATCCTCACTCTTTGAGCCTGCAGATTCCTCTCATGCTTTGGAACCAGACCACTCGAATTTCTCACAAGAAGAGGAAGACATCCTCAGCCAAAACATCTTGACCATGCCATTCCTACCAATGTTTGAAGTTGAATATGTCTGCTATGATGAACCACCTGAAAATCCTTGCATGTTCCGCTTCCCAGTTGAAGATCAAACCTTCTGTTTTTGGTAA 960 0.4344 MPGEMLNGGSSMTLLLQKERLPSSPDLIQTSWVQNSEPSFQGSKSLVNVVNVRNRPFFRGVEKEENGDDEDFDVFPHQPGKKRRLTSEQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGMLKAGYDILRRDYDNLVQENDKLKEEVYSLMKVIPREKEEQNLDDTSCGAVNSEHKEEKDLIIYRGSENGSKVALPVMVVSKQRDANSAKSDVLDSESPHLTDGNQSSLFEPADSSHALEPDHSNFSQEEEDILSQNILTMPFLPMFEVEYVCYDEPPENPCMFRFPVEDQTFCFW* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0727 319 CDD homeodomain 79 137 IPR001356 GO:0003677
Pvu3g0727 319 Coils Coil 149 176 - -
Pvu3g0727 319 Pfam Homeobox associated leucine zipper 136 174 IPR003106 GO:0006355|GO:0043565
Pvu3g0727 319 MobiDBLite consensus disorder prediction 231 273 - -
Pvu3g0727 319 SUPERFAMILY Homeodomain-like 70 138 IPR009057 -
Pvu3g0727 319 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Pvu3g0727 319 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Pvu3g0727 319 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Pvu3g0727 319 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Pvu3g0727 319 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 319 - -
Pvu3g0727 319 Gene3D - 76 141 - -
Pvu3g0727 319 MobiDBLite consensus disorder prediction 231 256 - -
Pvu3g0727 319 SMART HOX_1 78 140 IPR001356 GO:0003677
Pvu3g0727 319 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Pvu3g0727 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 319 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0727 Pvu-Chr3 10470873 10473078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0727 42 185 Homeobox Transcription Factor Family AT3G01470 54.483 9.47e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu3g0727 Homeodomain 7.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0727 - K09338 gmx:100804328 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0727 3 10470873 10473078 Pvu3g0727 3 10470873 10473078 ECH
Pvu2g0914 2 14549268 14551620 Pvu3g0727 3 10470873 10473078 PCT
Pvu3g0727 3 10470873 10473078 Pvu2g0697 2 8154166 8156347 PCT