Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0711 ATGATTTCCAACCAAATTCACGTGTTTCACTCTGCATTTCGCGTTCTCAGATATCCATGCACAAACTCACCAAACGCGCGTCCTTTGCTTTTGCTTCATCATAACACAAAAGAACTGTTCGGGCTGGAGGTGGAGCTCAAACCAAGCAAGGGTAAGTCTCATTCACCAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGGGAGCTACCTTGTCCCAGTTGCCGAGCAAGGGGTTATACACCTTGTACAGAGTGTGGAATAGAAAGATCAAGGCCAGACTGTCCAAAATGTTATGGAAAGGGTATATTGACTTGCTACCAATGCTCTGGAGATCGTGTTATATGGGAGGAATCAATTGATGAAAAACCATGGGAGAGAGCCCATTCTATTTCCCCACTTAAAGTGAAGGAAGATGATGAAGTTGACAAATTAGACATAAAGCTGGATGTGAAGAAAAAATCCAAGCGTGTTTACCACTCACCACCTCCAGAAGTTGGATTAAAGATTAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTGTTTAGCAACCGAATGAAGATTATTCACCAGGATCCCAAGCTTCAGGCACAGCGTGTGGCTGCTATTAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAGGCACACTTCCAAAACTATGAAAGCTTTCTTTAGTGATCCAATAAACAGACAGAAAAGGAGCATAGCCATGAAGGGAGTAAAATTCTACTGCCAAAACTGTGGACGAGAAGGGCATAGGAAACACTACTGTCCGGAACTGAAGGATACCTTGATTGATCGGCGATTCAAGTGTAGGGTGTGTGGGGAAAAAGGCCACAACAGAAGAACATGTAGCAAGATAGGGGTAAGCCATAGCAATGAGAGAATGATAAAACCCCATGAGTGCAGAGTCTGTGGGGAAAAGGGCCACAACAGAAGAACATGTAGGAAGTTAAGGATAAGCCATAGAAAGGGGAGAATGATAAAACAGCGGAAGTGTAAAGTATGTCTCCAATTGGGCCATAACCGTAGGACCTGTCCTGAAGTTGTTCCTAGTAAAAGAAACACGGCCTCTCCAAGGCCATACAAGTGTAGGTTGTGCAAGAAAAAGGGACATAATAGTAGGACATGTCCAAGTAAGACAGTTGTTACTGAACATCCTCAAGATTAA 1182 0.4349 MISNQIHVFHSAFRVLRYPCTNSPNARPLLLLHHNTKELFGLEVELKPSKGKSHSPEPRSWFGPNGQYIRELPCPSCRARGYTPCTECGIERSRPDCPKCYGKGILTCYQCSGDRVIWEESIDEKPWERAHSISPLKVKEDDEVDKLDIKLDVKKKSKRVYHSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKKAKGTVAARRHTSKTMKAFFSDPINRQKRSIAMKGVKFYCQNCGREGHRKHYCPELKDTLIDRRFKCRVCGEKGHNRRTCSKIGVSHSNERMIKPHECRVCGEKGHNRRTCRKLRISHRKGRMIKQRKCKVCLQLGHNRRTCPEVVPSKRNTASPRPYKCRLCKKKGHNSRTCPSKTVVTEHPQD* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0711 393 ProSiteProfiles Zinc finger CCHC-type profile. 248 263 IPR001878 GO:0003676|GO:0008270
Pvu3g0711 393 SUPERFAMILY Retrovirus zinc finger-like domains 245 290 IPR036875 GO:0003676|GO:0008270
Pvu3g0711 393 Gene3D - 244 302 - -
Pvu3g0711 393 ProSiteProfiles Zinc finger CCHC-type profile. 274 290 IPR001878 GO:0003676|GO:0008270
Pvu3g0711 393 ProSiteProfiles Zinc finger CCHC-type profile. 306 321 IPR001878 GO:0003676|GO:0008270
Pvu3g0711 393 Pfam Zinc knuckle 363 382 IPR025829 -
Pvu3g0711 393 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 30 321 - -
Pvu3g0711 393 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 305 386 - -
Pvu3g0711 393 SMART c2hcfinal6 305 321 IPR001878 GO:0003676|GO:0008270
Pvu3g0711 393 SMART c2hcfinal6 367 383 IPR001878 GO:0003676|GO:0008270
Pvu3g0711 393 SMART c2hcfinal6 336 352 IPR001878 GO:0003676|GO:0008270
Pvu3g0711 393 SMART c2hcfinal6 274 290 IPR001878 GO:0003676|GO:0008270
Pvu3g0711 393 SMART c2hcfinal6 247 263 IPR001878 GO:0003676|GO:0008270
Pvu3g0711 393 Gene3D - 330 392 - -
Pvu3g0711 393 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 305 386 - -
Pvu3g0711 393 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 30 321 - -
Pvu3g0711 393 SUPERFAMILY Retrovirus zinc finger-like domains 329 384 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0711 337 389 C2H2 Transcription Factor Family AT5G20220 50.000 6.67e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0711 - - var:108323927 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0711 3 10180924 10185761 Pvu3g0711 3 10180924 10185761 ECH