Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0710 ATGTTGAACTTGCAGTTTCAACTACACTCTCAACCATCAATGTTATCGTCTTTATCTTCCTTATCCTCGTCTTCTCCTAAGCTATTCGCAAACCACTCTTTCTCTCCAAAGTCTCTTCCTTTCAACCCTCCTAAACCCTTCTCCCTAAGATGTCGCCACTCTGACCTCTTCGACCAGAACACCTTAGCCTCATCACAACGACCCACAAGACCCACTGCTTCAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACTTTGACTCCTAGGCCACCGGAATTCGTGCCGCTCGATTCAGGGGCATATAAAATATCTAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCTGCTGTTGGTACACGCCAATATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCAGTGGGGGAAATGGGAAGTGTAATAAGCCTTGGTACAAGGGAGTCCTTTGAATTTTTTCATGACCCTTTTAAGGGAAAAAGCGATGAAGGCAAAGTCAGGAAAATTTTGAAGCTGGAACCTCTTCCAGATGGTTCTGGGCACTTATTTAACCTAAGTGTTCAAAACAAGCTTGTAAACGTGGATGAAAACATCTACATTCCTATTACAAAAGCAGAGTTAGCAGTTTTGACCTCAACTTTCAATTTTATCATGCCATACCTTCTTGGTTGGCATACCTTTGCAAACTCTATAAAGCCAGAAGATACTAGCGGAGGGAATAATGCCAACCCAAGATATGGAGGTGACTATGAATGGAACAGATAG 789 0.4322 MLNLQFQLHSQPSMLSSLSSLSSSSPKLFANHSFSPKSLPFNPPKPFSLRCRHSDLFDQNTLASSQRPTRPTASALPPRVYVGYSIYKGKAALTLTPRPPEFVPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGTRESFEFFHDPFKGKSDEGKVRKILKLEPLPDGSGHLFNLSVQNKLVNVDENIYIPITKAELAVLTSTFNFIMPYLLGWHTFANSIKPEDTSGGNNANPRYGGDYEWNR* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0710 262 MobiDBLite consensus disorder prediction 241 262 - -
Pvu3g0710 262 Pfam Whirly transcription factor 86 220 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pvu3g0710 262 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 48 262 IPR013742 GO:0003697|GO:0006355|GO:0006952
Pvu3g0710 262 SUPERFAMILY ssDNA-binding transcriptional regulator domain 78 262 IPR009044 GO:0003677|GO:0006355
Pvu3g0710 262 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 48 262 - -
Pvu3g0710 262 Gene3D Transcriptional Coactivator Pc4; Chain A 73 249 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0710 Pvu-Chr3 10160407 10163562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0710 8 262 Whirly Transcription Factor Family AT1G14410 64.706 2.45e-117 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Pvu3g0710 Whirly 7.5e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0710 - - gmx:100789252 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0710 3 10160407 10163562 Pvu3g0710 3 10160407 10163562 ECH
Pvu2g0926 2 14943827 14948711 Pvu3g0710 3 10160407 10163562 PCT