Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0701 ATGGGTAACTGCATAGGTTCTTCGGCTAAAGTAGAAGCAGCTCACAGTTCCAGAACCCCTTCTGGAATTTCAAAGACTAGTCCTTCATCTGTTCCTTCGAACTTATCTATTCAGTCATACTGTGAAGCAAGTGATGTCTCAAATCTTCCCACTCCAAGGTCCGAGGGTGAAATTTTGTCTTCCCCTAATCTTAAGGCCTTTGCCTTTAATGAGCTAAGGAATGCCACCAGAAACTTTCGTCCTGACAGTCTTCTTGGGGAAGGAGGCTTTGGTTATGTTTACAAGGGGTGGATTGATGAACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTAGTTGCTGTTAAGAAACTCAAGCCTGAAGGGTTACAAGGTCATAAAGAGTGGTTGACTGAAGTGGACTACCTTGGGCAACTTCACCATCAGAATTTGGTTAAATTGATTGGATACTGCGTGGAGGGAGAGAACCGGTTGTTGGTCTATGAGTTTATGTCCAAAGGGAGCTTAGAGAATCATCTATTTAGAAGAGGACCACAGCCTCTATCTTGGTCAGTGAGAATGAAAGTGGCTATTGGTGCTGCCAGAGGGCTCTCTTTTCTTCATAATGCCCAGTCTCAAGTCATATACCGTGATTTTAAAGCATCTAATATCCTACTTGACGCGGATTTCAATCCTAAGCTCTCTGATTTTGGCTTAGCAAAGGCTGGCCCTACGGGTGATAGAACTCATGTCTCTACTCAAGTTATGGGAACTCAAGGATATGCAGCACCTGAATATGTTGCAACAGGTCGGCTGACAGCTAAAAGTGATGTATACAGCTTTGGTGTTGTGTTGCTTGAGCTATTGTCTGGTAGACGTGCCGTTGACAGAACAAAAGCTGGTGTGGAGCAGAATCTAGTAGAGTGGACAAAACCATATTTGGGTGACAAAAGAAAACTATTTCGGATTATGGATACCAAGTTGGGAGGCCAATACCCACAAAAAGGAGCCTACATGGCTGCCACTCTTGCACTACAATGCCTAAATCGTGAAGCCAAGGCAAGGCCTCCAATGACAGAGGTTTTAGAAACTCTTGAACAGATTGCAGCCTCAAAAACTGCTGGGAGAAACTCCCAAACAGAACAAAAGAGAGTCCATGCTCCTGTAAGAAAGTCTAAAGTGAAAATGGGTGCCCTTTGA 1182 0.4399 MGNCIGSSAKVEAAHSSRTPSGISKTSPSSVPSNLSIQSYCEASDVSNLPTPRSEGEILSSPNLKAFAFNELRNATRNFRPDSLLGEGGFGYVYKGWIDEHTFTASKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHQNLVKLIGYCVEGENRLLVYEFMSKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAQSQVIYRDFKASNILLDADFNPKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRTKAGVEQNLVEWTKPYLGDKRKLFRIMDTKLGGQYPQKGAYMAATLALQCLNREAKARPPMTEVLETLEQIAASKTAGRNSQTEQKRVHAPVRKSKVKMGAL* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0701 393 CDD STKc_IRAK 85 362 - -
Pvu3g0701 393 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 11 374 - -
Pvu3g0701 393 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Pvu3g0701 393 Gene3D Transferase(Phosphotransferase) domain 1 165 388 - -
Pvu3g0701 393 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Pvu3g0701 393 Pfam Protein tyrosine and serine/threonine kinase 83 359 IPR001245 GO:0004672|GO:0006468
Pvu3g0701 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Pvu3g0701 393 MobiDBLite consensus disorder prediction 1 33 - -
Pvu3g0701 393 SUPERFAMILY Protein kinase-like (PK-like) 54 359 IPR011009 -
Pvu3g0701 393 MobiDBLite consensus disorder prediction 365 393 - -
Pvu3g0701 393 ProSiteProfiles Protein kinase domain profile. 79 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g0701 393 MobiDBLite consensus disorder prediction 10 33 - -
Pvu3g0701 393 PANTHER OS01G0588500 PROTEIN-RELATED 11 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0701 Pvu-Chr3 9962583 9965871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0701 55 359 Glycoside Hydrolase AT3G07070 52.597 1.99e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pvu3g0701 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0701 - - gmx:100305401 740.339