Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0626 ATGAGTGGTTTGGGTGTAGTAGAGTGGCTTAGACCCCTTGTTGAGACCAATATTTGGGACTATGTAGTTGTTTGGAAATATGGGGATGATCCAACCAGGTTTATTGAGTGGATAGGTTGCTGTTGCAGAGGAAGTTGCAGCGTGAACCTTGGTGTTATGTCCAAAGAGGAAAAGGGTGAAGTATGTCACTTAGCTCCCATTTGCAGGGATAAGTATCTTCAGCATCATGTTAGAACAAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTTTGCATTGTCTCTCTATTCCGGTGTGCATGGAGAGGTTGCCATATCACAACAATCAAGATGGCTTACCAAGGATTCAATTGGAACCCAAGTTTTGATCCCTATTGTTGGTGGTCTTATTGAGCTCTTCACTGAAAAGCTGATTCCAATGGATATGAATATCATAGAACTCATAACAGCACATGGCTGTGTCTCTTTAAAGCAAGAAGCCATATCTGCACAGAGCTACACCTGTCTCAACATCATCGAACATCTGCCATTAACGGAACAGTACTCACATAGGTGGCTACCACACATGTCAGCAACTTTAACTCCTAGTATCCATCAGCCTGCAACAAAACAGTGCACCTCCCATCCTAGCATTGAAGGACCCCCCAGTGGGTCTAATCCTTCAATTGAAGAACCATCATTTGATTCAAAATTTGTTGGTTTGATTCCAGATGAGCATCTTAAACAATCAGCTAAAATGTCTCCCATCCCCAAAACTAAAATGTCCAAGTACAATAAAACTTCAGGGAAACAGCAGAGAGGTTTGAGTTCTCATTGCAGCGATGGGGAAGAAGATAAATCAAAACTGGTCAAGGAGCCTCAGAAGGAAGGGTACCAAGCCAAAAATCTTGTCACAGAGAGGAATAGGAGGAAAAAGATTAAAAATGGGCTTTTTACTCTGCGGTCTCTAGTCCCAAAGATAACCAAGATGGACAGAGCTGCAATTCTTGCAGACGCAGTTGACTATATAAAGGAATTACAAACTCAAATGAAAGAACTCAAAGATGAGGTCAGGGCTTTGGAAGTACAGGACCGTGAGAAGAACACACCACAACCGAGGAAAGCAGCTGTGAATGAACAAGAAGGAACCAGAAGTAGCACTCTTAATCAAAGTTCTTCTGACTGCACTAAAAAGATGCCGATGGAGAAGCAAGGTAGATTCTCAAAGTTGATGGAAGCTATACATTCAATTGGACTGCAGGTGGCTAGTGCCAATATAATGACATTTGATGCTAAAGTCCTGAACATTCTGACGGTTAAGGCAACCAATAAGGATATTCACCCAACTAAACTGAAAGAGTATTTAATACAGAAGACAAGTGATGATAGACAAAGTAGGTAA 1377 0.419 MSGLGVVEWLRPLVETNIWDYVVVWKYGDDPTRFIEWIGCCCRGSCSVNLGVMSKEEKGEVCHLAPICRDKYLQHHVRTKACEALAQLPFALSLYSGVHGEVAISQQSRWLTKDSIGTQVLIPIVGGLIELFTEKLIPMDMNIIELITAHGCVSLKQEAISAQSYTCLNIIEHLPLTEQYSHRWLPHMSATLTPSIHQPATKQCTSHPSIEGPPSGSNPSIEEPSFDSKFVGLIPDEHLKQSAKMSPIPKTKMSKYNKTSGKQQRGLSSHCSDGEEDKSKLVKEPQKEGYQAKNLVTERNRRKKIKNGLFTLRSLVPKITKMDRAAILADAVDYIKELQTQMKELKDEVRALEVQDREKNTPQPRKAAVNEQEGTRSSTLNQSSSDCTKKMPMEKQGRFSKLMEAIHSIGLQVASANIMTFDAKVLNILTVKATNKDIHPTKLKEYLIQKTSDDRQSR* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0626 458 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 63 452 - -
Pvu3g0626 458 MobiDBLite consensus disorder prediction 353 391 - -
Pvu3g0626 458 MobiDBLite consensus disorder prediction 365 390 - -
Pvu3g0626 458 PANTHER TRANSCRIPTION FACTOR BHLH90 63 452 - -
Pvu3g0626 458 MobiDBLite consensus disorder prediction 269 287 - -
Pvu3g0626 458 MobiDBLite consensus disorder prediction 241 291 - -
Pvu3g0626 458 Pfam Helix-loop-helix DNA-binding domain 296 339 IPR011598 GO:0046983
Pvu3g0626 458 Gene3D - 282 356 IPR036638 GO:0046983
Pvu3g0626 458 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 148 IPR025610 -
Pvu3g0626 458 Coils Coil 328 355 - -
Pvu3g0626 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 338 IPR011598 GO:0046983
Pvu3g0626 458 MobiDBLite consensus disorder prediction 252 268 - -
Pvu3g0626 458 MobiDBLite consensus disorder prediction 196 227 - -
Pvu3g0626 458 SMART finulus 295 344 IPR011598 GO:0046983
Pvu3g0626 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 289 356 IPR036638 GO:0046983
Pvu3g0626 458 MobiDBLite consensus disorder prediction 196 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0626 Pvu-Chr3 8186159 8189466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0626 6 451 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 29.457 7.09e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g0626 bHLH-MYC_N 2e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0626 - - gmx:100807261 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0626 3 8186159 8189466 Pvu3g0626 3 8186159 8189466 ECH