Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0607 ATGGTTTACTCCTTCTATGACAAAAGCTCTTCTTCTGGTTCTGGCTCTGATACTTCGGGCTTGTTCAATCCCACTTTGCGAAGCCTTGGAGCTTCCAATGGTGATGTTGTGAAGGGTGGCTTGTCATCATCGCATTCTTTGGTTTATGAGAGTGAGAAGGGAGAGCTGGTGAAGTATTCTTCGGCTGCAAGGGTGGGGAAGAATGAGATTTGTGAGGCCAAAGCTTTGGCTGCTTTGAAGAATCATAGTGAAGCAGAGAGGAGAAGGAGGGAGAGAATAAACGGTCATCTTACAACACTACGTGGCCTTGTACCATCCACTGAAAAGATGGATAAAGCCACTTTACTGGCTGAAGTGATCAGCCAAGTGAAGGAGTTGAAGAAAACTGCAGTAGAAGCAAGCAAGGGTTTTCTAATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCATGTGACGGATCCAAGTCTTACAGTGCAACTATTTGCTGTGATTTCCGACCTGAAATAATATCTGACCTAAGACAAACACTTGATTCCCTTCCACTGCATCTAGAGAAGGCAGAAATTTCAACTTTGGCAGGAAGAATGAAGAATGTATTCGTCTTTACATGTTGCAAAGGGAACATTAATATTGATACTGAAGAATGCCAAGCTCTTGCAAGAACTGTTCACCAGGCACTATCTTCTGTACTGGATAAGGCTTCTGCTTCACTTGAGTTCTCACCCAGAACATCACATGCTAACAAGAGGAGAAGACTATGCTTTATTGAAACATCCACTTCCTCATGCAACCATGGATCTTGTTTGTGTTGA 813 0.4317 MVYSFYDKSSSSGSGSDTSGLFNPTLRSLGASNGDVVKGGLSSSHSLVYESEKGELVKYSSAARVGKNEICEAKALAALKNHSEAERRRRERINGHLTTLRGLVPSTEKMDKATLLAEVISQVKELKKTAVEASKGFLIPMDADEVKVEPCDGSKSYSATICCDFRPEIISDLRQTLDSLPLHLEKAEISTLAGRMKNVFVFTCCKGNINIDTEECQALARTVHQALSSVLDKASASLEFSPRTSHANKRRRLCFIETSTSSCNHGSCLC* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0607 270 PANTHER TRANSCRIPTION FACTOR BHLH30 3 263 IPR045847 GO:0003700|GO:0006355
Pvu3g0607 270 Gene3D - 74 135 IPR036638 GO:0046983
Pvu3g0607 270 SMART finulus 83 132 IPR011598 GO:0046983
Pvu3g0607 270 Pfam Helix-loop-helix DNA-binding domain 81 126 IPR011598 GO:0046983
Pvu3g0607 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 126 IPR011598 GO:0046983
Pvu3g0607 270 PANTHER DNA BINDING PROTEIN-LIKE 3 263 - -
Pvu3g0607 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 129 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0607 Pvu-Chr3 7834232 7837808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0607 26 253 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.426 5.53e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g0607 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0607 - - gmx:100804756 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0607 3 7834232 7837808 Pvu3g0607 3 7834232 7837808 ECH