Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0605 ATGGACTTCTCGAAGAAGCGCAAGACCGAAGAGAACGGGGATGCTGATTCTCTGTCGTCACCACCCTCACAAGCATTCCCCACCGCCACCGTCCCCACAACCGCCCCCCTCGCCGCGGAAGACATCCGCAAGATCTTGCGTCCGTTTTCCCAGGAACAGCTCCTCGACCTCCTCCAATCAGCGTCGCTCCGCCACTCCGACGTCCTCGATGCCGTGCGCGCGGTCGCGGACCGCGACTCCACCCTCCGAAAGCTATTCGTACGTGGACTCGCCGGCGAAACCACTAGCGAGACCCTGCGGAGCGTGTTCTCGGCGTTCGGCGAACTCGACGAGGCCATCGTGATCTTCGACAAGGCCACGGGACGCTCCAAGGGCTATGGCTTCGTGGTGTTCCGCCACGTGGACGGTGCTATCCTCGCGCTGAAGGACCCCAGCAAGAAGATCGACGGCCGCATGACGGTCACGCAACTCGCCGCGGCTGGTGGGCCCGGTGGCTCCGGGGACGTGTCCGCGAGGAAGGTTTTCGTCGGGAACGTTCCGTTCGAGATCTCATCGGATAAACTATTGAGCGAGTTCCTCAAGTTCGGAGAGGTCGAGGAAGGGCCTCTAGGGTTTGACAAATCCAGCGGCAAATCGAGGGGTTTCGCTTTCTTCGTTTATAAGACAGAGGAAGGTGCGAGGGCTTCGTTGCAGGAACCTGTTAAGACCATTGATGGGCACCAAGTGATTTGCAAATTGGCTGTTGATAGCAAAAAGACGAAACCCTTTGGAGGGGATCATCAACAGCATCAACACACGCAGCAGCAGCAACATCCGCAGCAACAGATGCAACAAGGTCCTATGATGGTACCTCATTATGGTGGATATGGTGGGAATGGCTACGGAATGCAGCAGCCGGTGCCACAGTATAACAATCCGGTTCAGGTTTCTGGTGGTGGTGGGTATGGCCATGGAATTGGTGGTGGATATGGTAATTCGCAGATGGGTGGGCCGGTTTCCGGTGACTATGGTACTAGATTGCCTCCCAATTCTGGTGGGGGATTCCCTGAAGGCTCCCAGTATGGCTACCCTGCTTCTTCCACGCTTCCACCGCAGCAGCAAGTGCCATTGCCGAGACCTCCTCCTGGAGGAATGTACCAAGGCGTGCCACCCTATTATTGA 1161 0.5745 MDFSKKRKTEENGDADSLSSPPSQAFPTATVPTTAPLAAEDIRKILRPFSQEQLLDLLQSASLRHSDVLDAVRAVADRDSTLRKLFVRGLAGETTSETLRSVFSAFGELDEAIVIFDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLAAAGGPGGSGDVSARKVFVGNVPFEISSDKLLSEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLQEPVKTIDGHQVICKLAVDSKKTKPFGGDHQQHQHTQQQQHPQQQMQQGPMMVPHYGGYGGNGYGMQQPVPQYNNPVQVSGGGGYGHGIGGGYGNSQMGGPVSGDYGTRLPPNSGGGFPEGSQYGYPASSTLPPQQQVPLPRPPPGGMYQGVPPYY* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0605 386 MobiDBLite consensus disorder prediction 1 30 - -
Pvu3g0605 386 MobiDBLite consensus disorder prediction 260 280 - -
Pvu3g0605 386 CDD RRM_RBM24_RBM38_like 83 157 - -
Pvu3g0605 386 SUPERFAMILY RNA-binding domain, RBD 77 162 IPR035979 GO:0003676
Pvu3g0605 386 MobiDBLite consensus disorder prediction 326 386 - -
Pvu3g0605 386 Gene3D - 166 279 IPR012677 -
Pvu3g0605 386 MobiDBLite consensus disorder prediction 364 386 - -
Pvu3g0605 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 253 IPR000504 GO:0003723
Pvu3g0605 386 PANTHER GEO13361P1-RELATED 1 357 - -
Pvu3g0605 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 160 IPR000504 GO:0003723
Pvu3g0605 386 Gene3D - 74 161 IPR012677 -
Pvu3g0605 386 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 357 - -
Pvu3g0605 386 MobiDBLite consensus disorder prediction 253 280 - -
Pvu3g0605 386 CDD RRM_RBM24_RBM38_like 172 247 - -
Pvu3g0605 386 MobiDBLite consensus disorder prediction 15 30 - -
Pvu3g0605 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 151 IPR000504 GO:0003723
Pvu3g0605 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 241 IPR000504 GO:0003723
Pvu3g0605 386 SUPERFAMILY RNA-binding domain, RBD 169 264 IPR035979 GO:0003676
Pvu3g0605 386 SMART rrm1_1 173 245 IPR000504 GO:0003723
Pvu3g0605 386 SMART rrm1_1 84 156 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0605 Pvu-Chr3 7820206 7822465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0605 155 247 C2H2 Transcription Factor Family AT2G19380 31.183 1.68e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0605 K12741 - gmx:100804230 542.732