Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0585 ATGAGTAGAGGTGAAAATAACATGAAAAAATTGGAAGCCGTGTTATATTTAGAAGAAGTGCGGATGAGATTTGAAGACAAGGAAAAGTTCGTGGAGTTTTTGGAGATCATAAACGATTATAGAGTTCATAGAATGAGTGTTGGGAGTGTGGTAGAAAAAGTGGAGGAATTTCTTAAAGGCCACCGTGATCTCATTTATGGATTTAACAACTTTCTGCCAAAGGGATATGAAATCCTTCTTCTACCTAAGGGTCCAGTCCAGTTGGAAGATGCTATCAGATATGTGCAGAAGGTTAAGGATCGATTTGAAGACACAAATGATACCTACAAGGCATTTGTAAAGATATTAACTGATAGGAACAAATATGGCATGTCAGTTGGTGAAGTATACCATGAGGCAAGTGTTGTCTATGTATTTGTTTTGACAAATTGA 432 0.3681 MSRGENNMKKLEAVLYLEEVRMRFEDKEKFVEFLEIINDYRVHRMSVGSVVEKVEEFLKGHRDLIYGFNNFLPKGYEILLLPKGPVQLEDAIRYVQKVKDRFEDTNDTYKAFVKILTDRNKYGMSVGEVYHEASVVYVFVLTN* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0585 143 Pfam Paired amphipathic helix repeat 28 72 IPR003822 GO:0006355
Pvu3g0585 143 SUPERFAMILY PAH2 domain 83 134 IPR036600 GO:0006355
Pvu3g0585 143 PANTHER SIN3B-RELATED 11 134 IPR039774 GO:0003714
Pvu3g0585 143 ProSiteProfiles PAH domain profile. 4 75 IPR003822 GO:0006355
Pvu3g0585 143 ProSiteProfiles PAH domain profile. 84 143 IPR003822 GO:0006355
Pvu3g0585 143 SUPERFAMILY PAH2 domain 8 76 IPR036600 GO:0006355
Pvu3g0585 143 Gene3D Paired amphipathic helix 83 140 IPR036600 GO:0006355
Pvu3g0585 143 Gene3D Paired amphipathic helix 5 74 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0585 Pvu-Chr3 7370307 7371059 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0585 12 105 WRKY Transcription Factor Family AT4G12020 36.170 8.83e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu3g0585 PAH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0585 K11644 - var:108321439 173.326